Erik Aurell

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 4

Top Topics

Stochastic Local Search

Maximum Entropy

Random Sat Instances

Protein Structure

Top Venues

PLoS Comput. Biol.

J. Comput. Phys.

Publications

Erik Aurell, Ryoichi Kawai
A Perspective on Lindblad's Non-Equilibrium Entropy. Open Syst. Inf. Dyn. 30 (2) (2023)
Erik Aurell, Jean Barbier, Aurélien Decelle, Roberto Mulet
The mighty force: statistical inference and high-dimensional statistics. CoRR (2022)
Erik Aurell
On Work and Heat in Time-Dependent Strong Coupling. Entropy 19 (11) (2017)
Erik Aurell
The Maximum Entropy Fallacy Redux? PLoS Comput. Biol. 12 (5) (2016)
Christoph Feinauer, Marcin J. Skwark, Andrea Pagnani, Erik Aurell
Improving Contact Prediction along Three Dimensions. PLoS Comput. Biol. 10 (10) (2014)
Magnus Ekeberg, Tuomo Hartonen, Erik Aurell
Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences. J. Comput. Phys. 276 (2014)
Saikat Chatterjee, David Koslicki, Siyuan Dong, Nicolas Innocenti, Lu Cheng, Yueheng Lan, Mikko Vehkaperä, Mikael Skoglund, Lars K. Rasmussen, Erik Aurell, Jukka Corander
-mer-based estimation of bacterial community composition. Bioinform. 30 (17) (2014)
Rémi Lemoy, Mikko Alava, Erik Aurell
A novel local search for random K-SAT. CoRR (2013)
Lu-lu Wu, Hai-Jun Zhou, Mikko Alava, Erik Aurell, Pekka Orponen
Witness of unsatisfiability for a random 3-satisfiability formula CoRR (2013)
Mikko Vehkaperä, Yoshiyuki Kabashima, Saikat Chatterjee, Erik Aurell, Mikael Skoglund, Lars K. Rasmussen
Analysis of Sparse Representations Using Bi-Orthogonal Dictionaries CoRR (2012)
Mikko Vehkaperä, Yoshiyuki Kabashima, Saikat Chatterjee, Erik Aurell, Mikael Skoglund, Lars K. Rasmussen
Analysis of sparse representations using bi-orthogonal dictionaries. ITW (2012)
Supriya Krishnamurthy, John Ardelius, Erik Aurell, Mads Dam, Rolf Stadler, Fetahi Wuhib
The Accuracy of Tree-based Counting in Dynamic Networks CoRR (2010)
Supriya Krishnamurthy, John Ardelius, Erik Aurell, Mads Dam, Rolf Stadler, Fetahi Zebenigus Wuhib
Brief announcement: the accuracy of tree-based counting in dynamic networks. PODC (2010)
Vishwambhar Rathi, Erik Aurell, Lars K. Rasmussen, Mikael Skoglund
Bounds on Thresholds Related to Maximum Satisfiability of Regular Random Formulas CoRR (2010)
Vishwambhar Rathi, Erik Aurell, Lars K. Rasmussen, Mikael Skoglund
-SAT. SAT (2010)
Vishwambhar Rathi, Erik Aurell, Lars K. Rasmussen, Mikael Skoglund
Bounds on Threshold of Regular Random $k$-SAT CoRR (2010)
Yasser Roudi, Erik Aurell, John A. Hertz
Statistical physics of pairwise probability models. Frontiers Comput. Neurosci. 3 (2009)
Erik Aurell, René Pfitzner
Gaussian Belief with dynamic data and in dynamic network CoRR (2009)
Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, Seif Haridi
An analytical study of a structured overlay in the presence of dynamic membership. IEEE/ACM Trans. Netw. 16 (4) (2008)
Mikko Alava, John Ardelius, Erik Aurell, Petteri Kaski, Supriya Krishnamurthy, Pekka Orponen, Sakari Seitz
Circumspect descent prevails in solving random constraint satisfaction problems. Proc. Natl. Acad. Sci. USA 105 (40) (2008)
Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, Seif Haridi
Comparing Maintenance Strategies for Overlays. PDP (2008)
Maria Werner, Ingemar Ernberg, JieZhi Zou, Jenny Almqvist, Erik Aurell
Epstein-Barr virus latency switch in human B-cells: a physico-chemical model. BMC Syst. Biol. 1 (2007)
Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, Seif Haridi
Comparing Maintenance Strategies for Overlays CoRR (2007)
Mikko Alava, John Ardelius, Erik Aurell, Petteri Kaski, Supriya Krishnamurthy, Pekka Orponen, Sakari Seitz
Circumspect descent prevails in solving random constraint satisfaction problems CoRR (2007)
Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, Seif Haridi
An Analytical Study of a Structured Overlay in the presence of Dynamic Membership CoRR (2007)
Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, Seif Haridi
A Statistical Theory of Chord Under Churn. IPTPS (2005)
Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, Seif Haridi
A Statistical Theory of Chord under Churn CoRR (2005)
Sameh El-Ansary, Erik Aurell, Seif Haridi
A Physics-Inspired Performance Evaluation of a Structured Peer-to-Peer Overlay Network. Parallel and Distributed Computing and Networks (2005)
Adam Ameur, Erik Aurell, Mats Carlsson, Jakub Orzechowski Westholm
Global gene expression analysis by combinatorial optimization. Silico Biol. 4 (2) (2004)
Erik Aurell, Sameh El-Ansary
A Physics-Style Approach to Scalability of Distributed systems. Global Computing (2004)
Erik Aurell, Uri Gordon, Scott Kirkpatrick
Comparing Beliefs, Surveys, and Random Walks. NIPS (2004)
Alexander K. Kozlov, Fredrik Ullén, Patriq Fagerstedt, Erik Aurell, Anders Lansner, Sten Grillner
Mechanisms for lateral turns in lamprey in response to descending unilateral commands: a modeling study. Biol. Cybern. 86 (1) (2002)
Alexander K. Kozlov, Erik Aurell, Grigori N. Orlovsky, Tatiana G. Deliagina, Pavel V. Zelenin, Jeanette Hellgren Kotaleski, Sten Grillner
Modeling postural control in the lamprey. Biol. Cybern. 84 (5) (2001)
Lars Rasmusson, Erik Aurell
A Price Dynamics in Bandwidth Markets for Point-to-point Connections CoRR (2001)
Alexander K. Kozlov, Jeanette Hellgren Kotaleski, Erik Aurell, Sten Grillner, Anders Lansner
Modeling of Substance P and 5-HT Induced Synaptic Plasticity in the Lamprey Spinal CPG: Consequences for Network Pattern Generation. J. Comput. Neurosci. 11 (2) (2001)
Alexander K. Kozlov, Patriq Fagerstedt, Fredrik Ullén, Erik Aurell
Turning behavior in lamprey in response to descending unilateral commands: Experiments and modeling. Neurocomputing (2001)
Alexander K. Kozlov, Jeanette Hellgren Kotaleski, Erik Aurell, Sten Grillner, Anders Lansner
Modeling of plasticity of the synaptic connections in the lamprey spinal CPG - consequences for network behavior. Neurocomputing (2000)
Alexander K. Kozlov, Erik Aurell, Grigori N. Orlovsky, Tatiana G. Deliagina, Pavel V. Zelenin, Jeanette Hellgren Kotaleski, Sten Grillner
Modeling control of roll-plane body orientation in lamprey. Neurocomputing (2000)
M. Ullström, Jeanette Hellgren Kotaleski, Jesper Tegnér, Erik Aurell, Sten Grillner, Anders Lansner
Activity-dependent modulation of adaptation produces a constant burst proportion in a model of the lamprey spinal locomotor generator. Biol. Cybern. 79 (1) (1998)