Hosna Jabbari

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 16

Top Topics

Structural Similarity

Gene Expression

Secondary Structure

Top Venues

Publications

Tara Newman, Hiu Fung Kevin Chang, Hosna Jabbari
DinoKnot: Duplex Interaction of Nucleic Acids With PseudoKnots. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (3) (2024)
Mateo Gray, Sebastian Will, Hosna Jabbari
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration. Algorithms Mol. Biol. 19 (1) (2024)
Luke Trinity, Ian Wark, Lance Lansing, Hosna Jabbari, Ulrike Stege
Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot. PLoS Comput. Biol. 19 (2) (2023)
Mateo Gray, Sebastian Will, Hosna Jabbari
SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles. WABI (2023)
Majid Khabbazian, Hosna Jabbari
AI-powered aptamer generation. Nat. Comput. Sci. 2 (6) (2022)
Raul I. Perez Martell, Alison Ziesel, Hosna Jabbari, Ulrike Stege
Supervised promoter recognition: a benchmark framework. BMC Bioinform. 23 (1) (2022)
Tristan Zaborniak, Juan Giraldo, Hausi A. Müller, Hosna Jabbari, Ulrike Stege
A QUBO model of the RNA folding problem optimized by variational hybrid quantum annealing. QCE (2022)
Mateo Gray, Sean Chester, Hosna Jabbari
KnotAli: informed energy minimization through the use of evolutionary information. BMC Bioinform. 23 (1) (2022)
Tara Newman, Hiu Fung Kevin Chang, Hosna Jabbari
In silico prediction of COVID-19 test efficiency with DinoKnot. ICHI (2021)
Alison Ziesel, Hosna Jabbari
Identification of conserved and evolving RNA secondary structures in SARS-CoV-2 and related viruses. CASCON (2021)
Luke Trinity, Lance Lansing, Hosna Jabbari, Ulrike Stege
SARS-CoV-2 Ribosomal Frameshifting Pseudoknot: Detection of Inter-viral Structural Similarity. ICHI (2021)
Luke Trinity, Andrew Hollar, Haley Greenyer, Hosna Jabbari, Ulrike Stege
Viz23: web server for visualization of gene expression and locational information. CASCON (2021)
Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will
Knotty: efficient and accurate prediction of complex RNA pseudoknot structures. Bioinform. 34 (22) (2018)
Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice. WABI (2017)
Sebastian Will, Hosna Jabbari
Sparse RNA folding revisited: space-efficient minimum free energy structure prediction. Algorithms Mol. Biol. 11 (2016)
Sebastian Will, Hosna Jabbari
Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction. WABI (2015)
Hosna Jabbari, Anne Condon
A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures. BMC Bioinform. 15 (2014)
Anne Condon, Hosna Jabbari
Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges. Theor. Comput. Sci. 410 (4-5) (2009)
Ho-Lin Chen, Anne Condon, Hosna Jabbari
) Algorithm for MFE Prediction of Kissing Hairpins and 4-Chains in Nucleic Acids. J. Comput. Biol. 16 (6) (2009)
Hosna Jabbari, Anne Condon, Shelly Zhao
Novel and Efficient RNA Secondary Structure Prediction Using Hierarchical Folding. J. Comput. Biol. 15 (2) (2008)
Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. WABI (2007)
Hosna Jabbari, Jon C. Muzio, Lin Sun
A New Class of Cellular Automata. DSD (2007)