Joanne Berghout

Publication Activity (10 Years)

Years Active: 2014-2021
Publications (10 Years): 12

Top Topics

Gene Expression

Top Venues

Briefings Bioinform.

Publications

Olga Afanasiev, Joanne Berghout, Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jonathan H. Chen, Roxana Daneshjou, Lukasz Kidzinski
Computational Challenges and Artificial Intelligence in Precision Medicine. PSB (2021)
Dillon Aberasturi, Nima Pouladi, Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Walter W. Piegorsch, Yves A. Lussier
'Single-subject studies'-derived analyses unveil altered biomechanisms between very small cohorts: implications for rare diseases. Bioinform. 37 (Supplement) (2021)
Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu, Liam Wilson, Hao Helen Zhang, Yves A. Lussier
Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions. BMC Bioinform. 21 (1) (2020)
Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu, Liam Wilson, Hao Helen Zhang, Yves A. Lussier
binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions. BMC Bioinform. 21 (1) (2020)
Francesca Vitali, Qike Li, A. Grant Schissler, Joanne Berghout, Colleen Kenost, Yves A. Lussier
Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes. Briefings Bioinform. 20 (3) (2019)
Qike Li, Samir Rachid Zaim, Dillon Aberasturi, Joanne Berghout, Haiquan Li, Francesca Vitali, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier
Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. AMIA (2019)
Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier
Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. PSB (2019)
Joanne Berghout, Yves A. Lussier, Francesca Vitali, Martha L. Bulyk, Maricel G. Kann, Jason H. Moore
Reading between the genes: interpreting non-coding DNA in high-throughput. PSB (2019)
Yves A. Lussier, Joanne Berghout, Francesca Vitali, Kenneth S. Ramos, Maricel G. Kann, Jason H. Moore
Session Introduction. PSB (2018)
Joanne Berghout, Qike Li, Nima Pouladi, Jianrong Li, Yves A. Lussier
Single subject transcriptome analysis to identify functionally signed gene set or pathway activity. PSB (2018)
Vincent Gardeux, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Donald Saner, Marilyn J. Halonen, Daniel Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. J. Am. Medical Informatics Assoc. 24 (6) (2017)
Qike Li, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, Yves A. Lussier
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. J. Biomed. Informatics 66 (2017)
Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Joanne Berghout, Jeff Campbell, Lori E. Corbani, Kim L. Forthofer, Pete J. Frost, Dave Miers, David R. Shaw, Kevin R. Stone, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald
The mouse Gene Expression Database (GXD): 2014 update. Nucleic Acids Res. 42 (Database-Issue) (2014)