Qike Li

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 10

Top Topics

Association Studies

Feature Selection

Genome Sequencing

Functional Analysis

Top Venues

J. Biomed. Informatics

Publications

Qike Li, Samir Jamkhande, Pavel Kochetkov, Pai Liu
Assign Experiment Variants at Scale in Online Controlled Experiments. CoRR (2022)
Xian Huang, Xin Jin, Qike Li, Keliang Zhang
On Construction of the ASR-oriented Indian English Pronunciation Dictionary. LREC (2020)
Francesca Vitali, Qike Li, A. Grant Schissler, Joanne Berghout, Colleen Kenost, Yves A. Lussier
Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes. Briefings Bioinform. 20 (3) (2019)
Qike Li, Samir Rachid Zaim, Dillon Aberasturi, Joanne Berghout, Haiquan Li, Francesca Vitali, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier
Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. AMIA (2019)
Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier
Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. PSB (2019)
Samir Rachid Zaim, Qike Li, A. Grant Schissler, Yves A. Lussier
Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses. PSB (2018)
Joanne Berghout, Qike Li, Nima Pouladi, Jianrong Li, Yves A. Lussier
Single subject transcriptome analysis to identify functionally signed gene set or pathway activity. PSB (2018)
Vincent Gardeux, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Donald Saner, Marilyn J. Halonen, Daniel Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. J. Am. Medical Informatics Assoc. 24 (6) (2017)
Qike Li, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, Yves A. Lussier
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. J. Biomed. Informatics 66 (2017)
A. Grant Schissler, Qike Li, James L. Chen, Colleen Kenost, Ikbel Achour, Dean Billheimer, Haiquan Li, Walter W. Piegorsch, Yves A. Lussier
Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. Bioinform. 32 (12) (2016)
Haiquan Li, Nima Pouladi, Ikbel Achour, Vincent Gardeux, Jianrong Li, Qike Li, Hao Helen Zhang, Fernando D. Martinez, Joe G. N. 'Skip' Garcia, Yves A. Lussier
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. J. Biomed. Informatics 58 (2015)
A. Grant Schissler, Vincent Gardeux, Qike Li, Ikbel Achour, Haiquan Li, Walter W. Piegorsch, Yves A. Lussier
Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival. Bioinform. 31 (12) (2015)
Naruekamol Pookhao, Michael B. Sohn, Qike Li, Isaac Jenkins, Ruofei Du, Hongmei Jiang, Lingling An
A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes. Bioinform. 31 (2) (2015)
Michael B. Sohn, Lingling An, Naruekamol Pookhao, Qike Li
Accurate genome relative abundance estimation for closely related species in a metagenomic sample. BMC Bioinform. 15 (2014)