José Luis Ambite

ORCID

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 46

Top Venues

CoRR

DILS

AMIA

Frontiers Neuroinformatics

Publications

Dimitris Stripelis, Chrysovalantis Anastasiou, Patrick Toral, Armaghan Asghar, José Luis Ambite
MetisFL: An Embarrassingly Parallelized Controller for Scalable & Efficient Federated Learning Workflows. DistributedML@CoNEXT (2023)
Dimitris Stripelis, José Luis Ambite
Federated Learning over Harmonized Data Silos. CoRR (2023)
Dimitris Stripelis, Chrysovalantis Anastasiou, Patrick Toral, Armaghan Asghar, José Luis Ambite
MetisFL: An Embarrassingly Parallelized Controller for Scalable & Efficient Federated Learning Workflows. CoRR (2023)
Lei Wang, José Luis Ambite, Abhishek M. Appaji, Janine Bijsterbosch, Jérôme Dockès, Rick Herrick, Alexander Kogan, Howard Lander, Daniel S. Marcus, Stephen Moore, Jean-Baptiste Poline, Arcot Rajasekar, Satya S. Sahoo, Matthew D. Turner, Xiaochen Wang, Yue Wang, Jessica A. Turner
NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data. Frontiers Neuroinformatics 17 (2023)
Satya S. Sahoo, Matthew D. Turner, Lei Wang, José Luis Ambite, Abhishek Appaji, Arcot Rajasekar, Howard Lander, Yue Wang, Jessica A. Turner
NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use. Frontiers Neuroinformatics 17 (2023)
Dimitris Stripelis, Umang Gupta, Nikhil Dhinagar, Greg Ver Steeg, Paul M. Thompson, José Luis Ambite
Towards Sparsified Federated Neuroimaging Models via Weight Pruning. CoRR (2022)
Dimitris Stripelis, Umang Gupta, Hamza Saleem, Nikhil Dhinagar, Tanmay Ghai, Rafael Sanchez, Chrysovalantis Anastasiou, Armaghan Asghar, Greg Ver Steeg, Srivatsan Ravi, Muhammad Naveed, Paul M. Thompson, José Luis Ambite
Secure Federated Learning for Neuroimaging. CoRR (2022)
Joel Mathew, Dimitris Stripelis, José Luis Ambite
Federated Named Entity Recognition. CoRR (2022)
Dimitris Stripelis, Marcin Abram, José Luis Ambite
Performance Weighting for Robust Federated Learning Against Corrupted Sources. CoRR (2022)
Dimitris Stripelis, Umang Gupta, Nikhil Dhinagar, Greg Ver Steeg, Paul M. Thompson, José Luis Ambite
Towards Sparsified Federated Neuroimaging Models via Weight Pruning. DeCaF/FAIR@MICCAI (2022)
Xiaochen Wang, Yue Wang, José Luis Ambite, Abhishek Appaji, Howard Lander, Stephen Moore, Arcot Rajasekar, Jessica A. D. Turner, Matthew Turner, Lei Wang, Satya Sahoo
Enabling Scientific Reproducibility through FAIR Data Management: An ontology-driven deep learning approach in the NeuroBridge Project. AMIA (2022)
Dimitris Stripelis, Umang Gupta, Greg Ver Steeg, José Luis Ambite
Federated Progressive Sparsification (Purge, Merge, Tune)+. CoRR (2022)
Dimitris Stripelis, Paul M. Thompson, José Luis Ambite
Semi-Synchronous Federated Learning for Energy-Efficient Training and Accelerated Convergence in Cross-Silo Settings. ACM Trans. Intell. Syst. Technol. 13 (5) (2022)
Ruhollah Shemirani, Stephane Wenric, Eimear Kenny, José Luis Ambite
EPS: automated feature selection in case-control studies using extreme pseudo-sampling. Bioinform. 37 (19) (2021)
Kenan Li, Huiyu Deng, John Morrison, Rima Habre, Meredith Franklin, Yao-Yi Chiang, Katherine Sward, Frank D. Gilliland, José Luis Ambite, Sandrah P. Eckel
W-TSS: A Wavelet-Based Algorithm for Discovering Time Series Shapelets. Sensors 21 (17) (2021)
Dimitris Stripelis, Hamza Saleem, Tanmay Ghai, Nikhil Dhinagar, Umang Gupta, Chrysovalantis Anastasiou, Greg Ver Steeg, Srivatsan Ravi, Muhammad Naveed, Paul M. Thompson, José Luis Ambite
Secure Neuroimaging Analysis using Federated Learning with Homomorphic Encryption. CoRR (2021)
Dimitris Stripelis, José Luis Ambite, Pradeep Lam, Paul Thompson
Scaling Neuroscience Research Using Federated Learning. ISBI (2021)
Yijun Lin, Yao-Yi Chiang, Meredith Franklin, Sandrah P. Eckel, José Luis Ambite
Building Autocorrelation-Aware Representations for Fine-Scale Spatiotemporal Prediction. CoRR (2021)
Dimitris Stripelis, José Luis Ambite
Semi-Synchronous Federated Learning. CoRR (2021)
Umang Gupta, Dimitris Stripelis, Pradeep K. Lam, Paul M. Thompson, José Luis Ambite, Greg Ver Steeg
Membership Inference Attacks on Deep Regression Models for Neuroimaging. CoRR (2021)
Umang Gupta, Dimitris Stripelis, Pradeep K. Lam, Paul M. Thompson, José Luis Ambite, Greg Ver Steeg
Membership Inference Attacks on Deep Regression Models for Neuroimaging. MIDL (2021)
José Luis Ambite, Lily Fierro, Jonathan Gordon, Gully A. P. C. Burns, Florian Geigl, Kristina Lerman, John D. Van Horn
BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science. IEEE Trans. Emerg. Top. Comput. 9 (1) (2021)
Dimitris Stripelis, José Luis Ambite, Pradeep Lam, Paul Thompson
Scaling Neuroscience Research using Federated Learning. CoRR (2021)
Dimitris Stripelis, José Luis Ambite
Accelerating Federated Learning in Heterogeneous Data and Computational Environments. CoRR (2020)
Yijun Lin, Yao-Yi Chiang, Meredith Franklin, Sandrah P. Eckel, José Luis Ambite
Building Autocorrelation-Aware Representations for Fine-Scale Spatiotemporal Prediction. ICDM (2020)
Shobeir Fakhraei, Joel Mathew, José Luis Ambite
NSEEN: Neural Semantic Embedding for Entity Normalization. ECML/PKDD (2) (2019)
Mohsen Sayyadiharikandeh, Jonathan Gordon, José Luis Ambite, Kristina Lerman
Finding Prerequisite Relations using the Wikipedia Clickstream. WWW (Companion Volume) (2019)
Yao-Yi Chiang, Yijun Lin, Meredith Franklin, Sandrah P. Eckel, José Luis Ambite, Wei-Shinn Ku
Building Explainable Predictive Analytics for Location-Dependent Time-Series Data. CogMI (2019)
José Luis Ambite, Jonathan Gordon, Lily Fierro, Gully Burns, Joel Mathew
Linking Educational Resources on Data Science. AAAI (2019)
Joel Mathew, Shobeir Fakhraei, José Luis Ambite
Biomedical Named Entity Recognition via Reference-Set Augmented Bootstrapping. CoRR (2019)
John D. Van Horn, Sumiko Abe, José Luis Ambite, Teresa K. Attwood, Niall Beard, Louisa Bellis, Avnish Bhattrai, Alex A. T. Bui, Gully Burns, Lily Fierro, Jonathan Gordon, Jeffrey S. Grethe, Jeana Kamdar, Xiaoyu Lei, Kristina Lerman, Annette McGrath, Nicola J. Mulder, Caroline O'Driscoll, Crystal Stewart, Sonika Tyagi
Advancing the international data science workforce through shared training and education. F1000Research 8 (2019)
John Darrell Van Horn, Lily Fierro, Jeana Kamdar, Jonathan Gordon, Crystal Stewart, Avnish Bhattrai, Sumiko Abe, Xiaoxiao Lei, Caroline O'Driscoll, Aakanchha Sinha, Priyambada Jain, Gully Burns, Kristina Lerman, José Luis Ambite
Democratizing data science through data science training. PSB (2018)
Yijun Lin, Nikhit Mago, Yu Gao, Yaguang Li, Yao-Yi Chiang, Cyrus Shahabi, José Luis Ambite
Exploiting spatiotemporal patterns for accurate air quality forecasting using deep learning. SIGSPATIAL/GIS (2018)
Dimitris Stripelis, Chrysovalantis Anastasiou, José Luis Ambite
Extending Apache Spark with a Mediation Layer. SBD@SIGMOD (2018)
Shobeir Fakhraei, José Luis Ambite
NSEEN: Neural Semantic Embedding for Entity Normalization. CoRR (2018)
José Luis Ambite, Lily Fierro, Florian Geigl, Jonathan Gordon, Gully A. P. C. Burns, Kristina Lerman, John D. Van Horn
BD2K ERuDIte: the Educational Resource Discovery Index for Data Science. WWW (Companion Volume) (2017)
Yijun Lin, Yao-Yi Chiang, Fan Pan, Dimitrios Stripelis, José Luis Ambite, Sandrah P. Eckel, Rima Habre
Mining Public Datasets for Modeling Intra-City PM2.5 Concentrations at a Fine Spatial Resolution. SIGSPATIAL/GIS (2017)
José Luis Ambite, Lily T. Fierro, Florian Geigl, Jonathan Gordon, Gully A. P. C. Burns, Kristina Lerman, Jeana Kamdar, Crystal Stewart, Avnish Bhattrai, Xiaoyu Lei, Sumiko Abe, John D. Van Horn
The BD2K Training Coordinating Center's Data Science Education Platform. AMIA (2017)
Dimitris Stripelis, José Luis Ambite, Yao-Yi Chiang, Sandrah P. Eckel, Rima Habre
A Scalable Data Integration and Analysis Architecture for Sensor Data of Pediatric Asthma. ICDE (2017)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite
Leveraging Linked Data to Discover Semantic Relations Within Data Sources. ISWC (1) (2016)
Katherine A. Sward, Alex A. Bui, José Luis Ambite, Michael Dellarco
Pediatric Research Using Integrated Sensor Monitoring Systems (PRISMS): Applying Sensor Technology and Informatics to Better Understand Asthma. AMIA (2016)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite
Learning the Semantics of Structured Data Sources. CoRR (2016)
Gully A. P. C. Burns, Ulf Hermjakob, José Luis Ambite
Abstract Meaning Representations as Linked Data. ISWC (2) (2016)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite
Learning the semantics of structured data sources. J. Web Semant. (2016)
Lei Wang, Kathryn I. Alpert, Vince D. Calhoun, Derin J. Cobia, David B. Keator, Margaret D. King, Alexander Kogan, Drew Landis, Marcelo Tallis, Matthew D. Turner, Steven G. Potkin, Jessica A. Turner, José Luis Ambite
SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration. NeuroImage 124 (2016)
Alexander Kogan, Kathryn I. Alpert, José Luis Ambite, Daniel S. Marcus, Lei Wang
Northwestern University schizophrenia data sharing for SchizConnect: A longitudinal dataset for large-scale integration. NeuroImage 124 (2016)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite, Yinyi Chen
Leveraging Linked Data to Infer Semantic Relations within Structured Sources. COLD (2015)
Naveen Ashish, Peehoo Dewan, José Luis Ambite, Arthur W. Toga
GEM: The GAAIN Entity Mapper. DILS (2015)
Jessica A. Turner, Danielle Pasquerello, Matthew D. Turner, David B. Keator, Kathryn I. Alpert, Margaret D. King, Drew Landis, Vince D. Calhoun, Steven G. Potkin, Marcelo Tallis, José Luis Ambite, Lei Wang
Terminology Development Towards Harmonizing Multiple Clinical Neuroimaging Research Repositories. DILS (2015)
José Luis Ambite, Marcelo Tallis, Kathryn I. Alpert, David B. Keator, Margaret D. King, Drew Landis, George Konstantinidis, Vince D. Calhoun, Steven G. Potkin, Jessica A. Turner, Lei Wang
SchizConnect: Virtual Data Integration in Neuroimaging. DILS (2015)
George Konstantinidis, José Luis Ambite
Optimizing the Chase: Scalable Data Integration under Constraints. Proc. VLDB Endow. 7 (14) (2014)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite
A Scalable Approach to Learn Semantic Models of Structured Sources. ICSC (2014)
Rahul Parundekar, Craig A. Knoblock, José Luis Ambite
Discovering Alignments in Ontologies of Linked Data. IJCAI (2013)
George Konstantinidis, José Luis Ambite
Scalable containment for unions of conjunctive queries under constraints. SWIM@SIGMOD Conference (2013)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite
A Graph-Based Approach to Learn Semantic Descriptions of Data Sources. ISWC (1) (2013)
Rahul Parundekar, Craig A. Knoblock, José Luis Ambite
Finding Concept Coverings in Aligning Ontologies of Linked Data. ESWC (Satellite Events) (2012)
George Konstantinidis, José Luis Ambite
Towards scalable data integration under constraints. EDBT/ICDT Workshops (2012)
Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite, Aman Goel, Shubham Gupta, Kristina Lerman, Maria Muslea, Mohsen Taheriyan, Parag Mallick
Semi-automatically Mapping Structured Sources into the Semantic Web. ESWC (2012)
Shefali Sharma, Leslie Lange, José Luis Ambite, Yigal Arens, Chun-Nan Hsu
Exploring Label Dependency in Active Learning for Phenotype Mapping. BioNLP@HLT-NAACL (2012)
Rahul Parundekar, Craig A. Knoblock, José Luis Ambite
Finding Concept Coverings in Aligning Ontologies of Linked Data. KNOW@LOD (2012)
Mohsen Taheriyan, Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite
Rapidly Integrating Services into the Linked Data Cloud. ISWC (1) (2012)
Rahul Parundekar, Craig A. Knoblock, José Luis Ambite
Discovering Concept Coverings in Ontologies of Linked Data Sources. ISWC (1) (2012)
George Konstantinidis, José Luis Ambite
Scalable query rewriting: a graph-based approach. SIGMOD Conference (2011)
Craig A. Knoblock, Pedro A. Szekely, José Luis Ambite, Shubham Gupta, Aman Goel, Maria Muslea, Kristina Lerman, Parag Mallick
Interactively Mapping Data Sources into the Semantic Web. LISC (2011)
Karl G. Helmer, José Luis Ambite, Joseph Ames, Rachana Ananthakrishnan, Gully Burns, Ann L. Chervenak, Ian T. Foster, Lee Liming, David B. Keator, Fabio Macciardi, Ravi K. Madduri, John-Paul Navarro, Steven G. Potkin, Bruce R. Rosen, Seth Ruffins, Robert Schuler, Jessica A. Turner, Arthur W. Toga, Christina Williams, Carl Kesselman
Enabling collaborative research using the Biomedical Informatics Research Network (BIRN). J. Am. Medical Informatics Assoc. 18 (4) (2011)
Chun-Nan Hsu, Cheng-Ju Kuo, Congxing Cai, Sarah A. Pendergrass, Marylyn D. Ritchie, José Luis Ambite
Learning Phenotype Mapping for Integrating Large Genetic Data. BioNLP@ACL (2011)
José Luis Ambite, Craig A. Knoblock
Planning by Rewriting CoRR (2011)
Rahul Parundekar, Craig A. Knoblock, José Luis Ambite
Linking and Building Ontologies of Linked Data. ISWC (1) (2010)
Naveen Ashish, José Luis Ambite, Maria Muslea, Jessica A. Turner
Neuroscience data integration through mediation: An (F)BIRN case study. Frontiers Neuroinformatics 4 (2010)
Rahul Parundekar, Craig A. Knoblock, José Luis Ambite
Linking the Deep Web to the Linked DataWeb. AAAI Spring Symposium: Linked Data Meets Artificial Intelligence (2010)
Zachary G. Ives, Craig A. Knoblock, Steven Minton, Marie Jacob, Partha Pratim Talukdar, Rattapoom Tuchinda, José Luis Ambite, Maria Muslea, Cenk Gazen
Interactive Data Integration through Smart Copy & Paste. CIDR (2009)
Zachary G. Ives, Craig A. Knoblock, Steven Minton, Marie Jacob, Partha Pratim Talukdar, Rattapoom Tuchinda, José Luis Ambite, Maria Muslea, Cenk Gazen
Interactive Data Integration through Smart Copy & Paste CoRR (2009)
José Luis Ambite, Sirish Darbha, Aman Goel, Craig A. Knoblock, Kristina Lerman, Rahul Parundekar, Thomas A. Russ
Automatically Constructing Semantic Web Services from Online Sources. ISWC (2009)
José Luis Ambite, Craig A. Knoblock, Kristina Lerman, Anon Plangprasopchok, Thomas A. Russ, Cenk Gazen, Steven Minton, Mark James Carman
Exploiting Data Semantics to Discover, Extract, and Model Web Sources. ICDM Workshops (2008)
Craig A. Knoblock, José Luis Ambite, Mark James Carman, Matthew Michelson, Pedro A. Szekely, Rattapoom Tuchinda
Beyond the Elves: Making Intelligent Agents Intelligent. AI Mag. 29 (2) (2008)
José Luis Ambite, Dipsy Kapoor
Automatic generation of data processing workflows for transportation modeling. DG.O (2007)
José Luis Ambite, Dipsy Kapoor
Automatically Composing Data Workflows with Relational Descriptions and Shim Services. ISWC/ASWC (2007)
Craig A. Knoblock, José Luis Ambite, Kavita Ganesan, Maria Muslea, Steven Minton, Greg Barish, Evan Gamble, Claude Nanjo, Kane See, Cyrus Shahabi, Ching-Chien Chen
EntityBases: Compiling, Organizing and Querying Massive Entity Repositories. IC-AI (2007)
Snehal Thakkar, Craig A. Knoblock, José Luis Ambite
Quality-driven geospatial data integration. GIS (2007)
José Luis Ambite, Genevieve Giuliano, Peter Gordon
ARGOS: dynamic composition of web services for goods movement analysis and planning (project highlights 2007). DG.O (2007)
José Luis Ambite, Dipsy Kapoor
Argos: a framework for automatically generating data processing workflows. DG.O (2007)
José Luis Ambite, Dipsy Kapoor, Mountu Jinwala
Data processing workflows in the social sciences: representation and automatic generation. DG.O (2006)
José Luis Ambite, Genevieve Giuliano, Peter Gordon, Mountu Jinwala, Dipsy Kapoor, LanLan Wang, Qisheng Pan
Argos: dynamic composition of web services for goods movement analysis and planning. DG.O (2006)
José Luis Ambite, Vinay K. Chaudhri, Richard Fikes, Jessica Jenkins, Sunil Mishra, Maria Muslea, Tomás E. Uribe, Guizhen Yang
Design and Implementation of the CALO Query Manager. AAAI (2006)
José Luis Ambite, Matthew Weathers
Automatic composition of aggregation workflows for transportation modeling. DG.O (2005)
Snehal Thakkar, José Luis Ambite, Craig A. Knoblock
Composing, optimizing, and executing plans for bioinformatics web services. VLDB J. 14 (3) (2005)
Stefan Decker, Michael Sintek, Andreas Billig, Nicola Henze, Peter Dolog, Wolfgang Nejdl, Andreas Harth, Andreas Leicher, Susanne Busse, José Luis Ambite, Matthew Weathers, Gustaf Neumann, Uwe Zdun
TRIPLE - an RDF Rule Language with Context and Use Cases. Rule Languages for Interoperability (2005)
José Luis Ambite, Craig A. Knoblock, Maria Muslea, Steven Minton
Conditional Constraint Networks for Interleaved Planning and Information Gathering. IEEE Intell. Syst. 20 (2) (2005)
José Luis Ambite, Genevieve Giuliano, Peter Gordon, Qisheng Pan, Naqeeb Abbasi, LanLan Wang, Matthew Weathers
Argos: dynamic composition of web services for goods movement analysis and planning. DG.O (2005)
José Luis Ambite, Vinay K. Chaudhri, Richard Fikes, Jessica Jenkins, Sunil Mishra, Maria Muslea, Tomás E. Uribe, Guizhen Yang
Integration of Heterogeneous Knowledge Sources in the CALO Query Manager. OTM Workshops (2005)
Martin Michalowski, José Luis Ambite, Craig A. Knoblock, Steven Minton, Snehal Thakkar, Rattapoom Tuchinda
Retrieving and Semantically Integrating Heterogeneous Data from the Web. IEEE Intell. Syst. 19 (3) (2004)
José Luis Ambite, Genevieve Giuliano, Peter Gordon, Stefan Decker, Andreas Harth, Karanbir Jassar, Qisheng Pan, LanLan Wang
Argos: An Ontology and Web Service Composition Infrastructure for Goods Movement Analysis. DG.O (2004)
José Luis Ambite, Genevieve Giuliano, Peter Gordon, Andreas Harth, LanLan Wang, Qisheng Pan, Stefan Decker
Argos: Dynamic Composition of Web Services for Goods Movement Analysis and Planning. DG.O (2004)
Shahram Ghandeharizadeh, Craig A. Knoblock, Christos Papadopoulos, Cyrus Shahabi, Esam Alwagait, José Luis Ambite, Min Cai, Ching-Chien Chen, Parikshit Pol, Rolfe R. Schmidt, Saihong Song, Snehal Thakkar, Runfang Zhou
Proteus: A System for Dynamically Composing and Intelligently Executing Web Services. ICWS (2003)
José Luis Ambite, Yigal Arens, Walter Bourne, Peter T. Davis, Eduard H. Hovy, Judith L. Klavans, Andrew Philpot, Samuel D. Popper, Kenneth A. Ross, Ju-Ling Shih, Peter Sommer, Surabhan Temiyabutr, Laura Zadoff
A Portal for Access to Complex Distributed Information about Energy. DG.O (2002)
José Luis Ambite, Genevieve Giuliano, Peter Gordon, Qisheng Pan, Sandipan Bhattacharjee
Integrating heterogeneous data sources for better freight flow analysis and planning. DG.O (2002)
José Luis Ambite, Greg Barish, Craig A. Knoblock, Maria Muslea, Jean Oh, Steven Minton
Getting from Here to There: Interactive Planning and Agent Execution for Optimizing Travel. AAAI/IAAI (2002)
Andrew Philpot, José Luis Ambite, Eduard H. Hovy
DGRC AskCal: Natural Language Question Answering for Energy Time Series. DG.O (2002)
José Luis Ambite, Craig A. Knoblock, Mohammad R. Kolahdouzan, Maria Muslea, Cyrus Shahabi, Snehal Thakkar
The WorlInfo Assistant: Spatio-Temporal Information Integration on the Web. VLDB (2001)
Craig A. Knoblock, Steven Minton, José Luis Ambite, Naveen Ashish, Ion Muslea, Andrew Philpot, Sheila Tejada
The Ariadne Approach to Web-Based Information Integration. Int. J. Cooperative Inf. Syst. 10 (1-2) (2001)

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Publication Activity (10 Years)

Top Topics

Top Venues

José Luis Ambite