Gully A. P. C. Burns

Publication Activity (10 Years)

Years Active: 1999-2021
Publications (10 Years): 7

Top Topics

Text Extraction

Automated Detection

Experimental Design

Top Venues

AAAI Fall Symposia

Database J. Biol. Databases Curation

Publications

José Luis Ambite, Lily Fierro, Jonathan Gordon, Gully A. P. C. Burns, Florian Geigl, Kristina Lerman, John D. Van Horn
BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science. IEEE Trans. Emerg. Top. Comput. 9 (1) (2021)
Pradeep Dasigi, Gully A. P. C. Burns, Eduard H. Hovy, Anita de Waard
Experiment Segmentation in Scientific Discourse as Clause-level Structured Prediction using Recurrent Neural Networks. CoRR (2017)
José Luis Ambite, Lily Fierro, Florian Geigl, Jonathan Gordon, Gully A. P. C. Burns, Kristina Lerman, John D. Van Horn
BD2K ERuDIte: the Educational Resource Discovery Index for Data Science. WWW (Companion Volume) (2017)
José Luis Ambite, Lily T. Fierro, Florian Geigl, Jonathan Gordon, Gully A. P. C. Burns, Kristina Lerman, Jeana Kamdar, Crystal Stewart, Avnish Bhattrai, Xiaoyu Lei, Sumiko Abe, John D. Van Horn
The BD2K Training Coordinating Center's Data Science Education Platform. AMIA (2017)
Gully A. P. C. Burns, Ulf Hermjakob, José Luis Ambite
Abstract Meaning Representations as Linked Data. ISWC (2) (2016)
Gully A. P. C. Burns, Anita de Waard, Pradeep Dasigi, Eduard H. Hovy
Cycles of Scientific Investigation in Discourse - Machine Reading Methods for the Primary Research Contributions of a Paper. ICBO/BioCreative (2016)
Gully A. P. C. Burns, Pradeep Dasigi, Anita de Waard, Eduard H. Hovy
Automated detection of discourse segment and experimental types from the text of cancer pathway results sections. Database J. Biol. Databases Curation 2016 (2016)
Gully A. P. C. Burns, Jessica A. Turner
Modeling functional Magnetic Resonance Imaging (fMRI) experimental variables in the Ontology of Experimental Variables and Values (OoEVV). NeuroImage 82 (2013)
David B. Keator, Karl G. Helmer, Jason Steffener, Jessica A. Turner, Theo G. M. van Erp, Syam Gadde, Naveen Ashish, Gully A. P. C. Burns, B. Nolan Nichols
Towards structured sharing of raw and derived neuroimaging data across existing resources. NeuroImage 82 (2013)
Kyle H. Ambert, Aaron M. Cohen, Gully A. P. C. Burns, Eilis Boudreau, M. Kemal Sönmez
Finna: A Paragraph Prioritization System for Biocuration in the Neurosciences. AAAI Fall Symposia (2013)
Gully A. P. C. Burns, Yolanda Gil, Yan Liu, Natalia Villanueva-Rosales
Preface. AAAI Fall Symposia (2013)
Kyle H. Ambert, Aaron M. Cohen, Gully A. P. C. Burns, Eilis Boudreau, M. Kemal Sönmez
Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. Frontiers Neuroinformatics 7 (2013)
Gully A. P. C. Burns, Yolanda Gil, Yan Liu, Natalia Villanueva-Rosales
Organizing Committee. AAAI Fall Symposia (2013)
Lynette Hirschman, Gully A. P. C. Burns, Martin Krallinger, Cecilia N. Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert S. Nash, Anne-Lise Veuthey, Thomas C. Wiegers, Andrew G. Winter
Text mining for the biocuration workflow. Database J. Biol. Databases Curation 2012 (2012)
Marcelo Tallis, Drashti Dave, Gully A. P. C. Burns
Preliminary Meta-Analyses of Experimental Design with Examples from HIV Vaccine Protection Studies. AAAI Fall Symposium: Discovery Informatics (2012)
David B. Keator, Karl G. Helmer, Jason Steffener, Jessica A. Turner, Theo G. M. van Erp, Syam Gadde, Naveen Ashish, Gully A. P. C. Burns, B. Nolan Nichols, Satrajit S. Ghosh
Towards structured sharing of raw and derived neuroimaging data across existing resources CoRR (2012)
Cartic Ramakrishnan, Abhishek Patnia, Eduard H. Hovy, Gully A. P. C. Burns
Layout-aware text extraction from full-text PDF of scientific articles. Source Code Biol. Medicine 7 (2012)
Thomas A. Russ, Cartic Ramakrishnan, Eduard H. Hovy, Mihail Bota, Gully A. P. C. Burns
Knowledge Engineering Tools for Reasoning with Scientific Observations and Interpretations: a Neural Connectivity Use Case. BMC Bioinform. 12 (2011)
Marcelo Tallis, Richard H. Thompson, Thomas A. Russ, Gully A. P. C. Burns
Knowledge Synthesis with Maps of Neural Connectivity. Frontiers Neuroinformatics 5 (2011)
Gully A. P. C. Burns, Thomas A. Russ
Biomedical knowledge engineering tools based on experimental design: a case study based on neuroanatomical tract-tracing experiments. K-CAP (2009)
Bruce William Herr II, Edmund M. Talley, Gully A. P. C. Burns, David Newman, Gavin LaRowe
The NIH Visual Browser: An Interactive Visualization of Biomedical Research. IV (2009)
Gully A. P. C. Burns, Wei-Cheng Cheng, Richard H. Thompson, Larry W. Swanson
The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases. BMC Bioinform. 7 (2006)
Arshad M. Khan, Joel D. Hahn, Wei-Cheng Cheng, Alan G. Watts, Gully A. P. C. Burns
NeuroScholar's electronic laboratory notebook and its application to neuroendocrinology. Neuroinformatics 4 (2) (2006)
Gully A. P. C. Burns, Arshad M. Khan, Shahram Ghandeharizadeh, Mark A. O'Neill, Yi-Shin Chen
Tools and approaches for the construction of knowledge models from the neuroscientific literature. Neuroinformatics 1 (1) (2003)
Gully A. P. C. Burns, Fang Bian, Wei-Cheng Cheng, Shyam Kapadia, Cyrus Shahabi, Shahram Ghandeharizadeh
Software engineering tools and approaches for neuroinformatics: the design and implementation of the View-Primitive Data Model framework (VPDMf). Neurocomputing (2002)
Cyrus Shahabi, Ali E. Dashti, Gully A. P. C. Burns, Shahram Ghandeharizadeh, Ning Jiang, Larry W. Swanson
Visualization of Spatial Neuroanatomical Data. VISUAL (1999)