Gregory Butler

Publication Activity (10 Years)

Years Active: 1981-2023
Publications (10 Years): 12

Top Topics

Similarity Graph

Data Warehousing

Top Venues

Publications

Hamed Ghazikhani, Gregory Butler
Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks. J. Integr. Bioinform. 20 (2) (2023)
Hamed Ghazikhani, Gregory Butler
TooT-BERT-C: A study on discriminating ion channels from membrane proteins based on the primary sequence's contextual representation from BERT models. ICBRA (2022)
Hamed Ghazikhani, Gregory Butler
TooT-BERT-M: Discriminating Membrane Proteins from Non-Membrane Proteins using a BERT Representation of Protein Primary Sequences. CIBCB (2022)
Sima Ataei, Gregory Butler
Predicting the specific substrate for transmembrane transport proteins using BERT language model. CIBCB (2022)
Hamed Ghazikhani, Gregory Butler
A Study on the Application of Protein Language Models in the Analysis of Membrane Proteins. DCAI (2) (2022)
Hamed Ghazikhani, Gregory Butler
TooT-BERT-T: A BERT Approach on Discriminating Transport Proteins from Non-transport Proteins. PACBB (2022)
Shiva Shamloo, Qing Ye, Gregory Butler
TportHMM: Predicting the substrate class of transmembrane transport proteins using profile Hidden Markov Models. BIBM (2020)
Munira Alballa, Gregory Butler
Integrative approach for detecting membrane proteins. BMC Bioinform. (19) (2020)
Munira Alballa, Gregory Butler
TooT-T: discrimination of transport proteins from non-transport proteins. BMC Bioinform. (3) (2020)
Stephanie Kamgnia Wonkap, Gregory Butler
BENIN: Biologically enhanced network inference. J. Bioinform. Comput. Biol. 18 (3) (2020)
Munira Alballa, Gregory Butler
Ontology-based transporter substrate annotation for benchmark datasets. BIBM (2019)
Christine Kehyayan, Gregory Butler
SynAPhy and SynAVal: Mining a Synteny-Similarity Graph to Resolve Orthology of Proteins in Fungal Genomes. BIBE (2017)
Gregory Butler
Computation for Genomics Knowledge Discovery. SE4HPCS@ICSE (2015)
Kimchi Strasser, Erin McDonnell, Carol Nyaga, Min Wu, Sherry Wu, Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Justin Powlowski, Gregory Butler, Adrian Tsang
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support. Database J. Biol. Databases Curation 2015 (2015)
Ian Reid, Nicholas O'Toole, Omar Zabaneh, Reza Nourzadeh, Mahmoud Dahdouli, Mostafa Abdellateef, Paul M. K. Gordon, Jung Soh, Gregory Butler, Christoph W. Sensen, Adrian Tsang
SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. BMC Bioinform. 15 (2014)
Thomas Triplet, Gregory Butler
A review of genomic data warehousing systems. Briefings Bioinform. 15 (4) (2014)
Thomas Triplet, Gregory Butler
BenchDW: a generic framework for biological data warehouse benchmarking. SAC (2013)
Thomas Triplet, Gregory Butler
The EnzymeTracker: an open-source laboratory information management system for sample tracking. BMC Bioinform. 13 (2012)
Jun Luo, Gregory Butler
: an extended tree index for attributed subgraph queries. IDEAS (2012)
Jianlong Qi, Tom Michoel, Gregory Butler
An integrative approach to infer regulation programs in a transcription regulatory module network. BCB (2011)
Jianlong Qi, Tom Michoel, Gregory Butler
Applying Linear Models to Learn Regulation Programs in a Transcription Regulatory Module Network. EvoBio (2011)
Jianlong Qi, Tom Michoel, Gregory Butler
A regression tree-based Gibbs sampler to learn the regulation programs in a transcription regulatory module network. CIBCB (2010)
Christine Kehyayan, Gregory Butler
Issues with the PipeAlign phylogenomics toolkit in identifying protein subfamilies. CIBCB (2010)
Alireza Shaneh, Gregory Butler
Bayesian Learning for Feed-Forward Neural Network with Application to Proteomic Data: The Glycosylation Sites Detection of the Epidermal Growth Factor-Like Proteins Associated with Cancer as a Case Study. Canadian Conference on AI (2006)
Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker
A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data. CSWWS (2006)
Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang
TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang
OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Shengbing Ren, Gregory Butler, Kexing Rui, Jian Xu, Wei Yu, Renhang Luo
A Prototype Tool for Use Case Refactoring. ICEIS (3) (2004)
Jingxue Zhou, Bin Nie, Gregory Butler
An Efficient B+-Tree Implementation in C++ Using the STL Style. ICEIS (1) (2004)
Vivien Liang, Gregory Butler
WISH Query Composer. ICEIS (1) (2004)
Jian Xu, Wei Yu, Kexing Rui, Gregory Butler
Use Case Refactoring: A Tool and a Case Study. APSEC (2004)
Shengbing Ren, Kexing Rui, Gregory Butler
Refactoring the Scenario Specification: A Message Sequence Chart Approach. OOIS (2003)
Kexing Rui, Gregory Butler
Refactoring Use Case Models: The Metamodel. ACSC (2003)
Gregory Butler, Xin Shen, Lugang Xu
Issues in Architectural Modeling and Evolution in the Know-It-All Case Study. ECBS (2003)
Kexing Rui, Shengbing Ren, Gregory Butler
Refactoring Use Case Models: A Case Study. ICEIS (3) (2003)
Gregory Butler
Architectural Refactoring in Framework Evolution: A Case Study. GPCE (2002)
Gregory Butler, Don S. Batory, Krzysztof Czarnecki, Ulrich W. Eisenecker
Generative Techniques for Product Lines. ICSE (2001)
Barbara Barth, Gregory Butler, Krzysztof Czarnecki, Ulrich W. Eisenecker
Generative Programming. ECOOP Workshops (2001)
Gregory Butler, Lugang Xu
Cascaded refactoring for framework. SSR (2001)
Shawn Delaney, Gregory Butler, Clement W. H. Lam, Larry H. Thiel
Three Improvements to the BLASTP Search of Genome Databases. SSDBM (2000)
Gregory Butler, Rudolf K. Keller, Hafedh Mili
A framework for framework documentation. ACM Comput. Surv. 32 (1es) (2000)
Gregory Butler, T. Kharma, O. Tjandra
Towards OM - An Object-Oriented Implementation of Mantra. Australasian Database Conference (1999)
Gregory Butler
Developing Frameworks by Aligning Requirements, Design, and Code. ECOOP Workshops (1999)
Gregory Butler
Software Architectures for Computer Algebra: A Case Study. DISCO (1996)
Gregory Butler, Peter Grogono, Rajjan Shinghal, Indra A. Tjandra
Document Recognition, Semantics, and Symbolic Reasoning in Reverse Engineering of Software. AISMC (1996)
Frank Ng, Gregory Butler, Judy Kay
An Intelligent Tutoring System for the Dijkstra-Gries Methodology. IEEE Trans. Software Eng. 21 (5) (1995)
Indra A. Tjandra, Gregory Butler
Formal Representation of Reusable Software Modules. WCRE (1995)
Gregory Butler
Easy Verification of Behavioural Subtyping in Common Cases. Inf. Process. Lett. 55 (1) (1995)
Gregory Butler, Peter Grogono, Rajjan Shinghal, Indra A. Tjandra
Retrieving Information from Data Flow Diagrams. WCRE (1995)
Gregory Butler, Peter Grogono, Rajjan Shinghal, Indra A. Tjandra
Analyzing the logical structure of data flow diagrams in software documents. ICDAR (1995)
Gregory Butler
Intelligent Mathematical Databases. DASFAA (1995)
Gregory Butler, Sridhar S. Iyer, E. A. O'Brien
A Database of Groups of Prime-power Order. Softw. Pract. Exp. 24 (10) (1994)
Gregory Butler, Clement W. H. Lam
The Preliminary Design of an Object-Oriented Framework for Combinatorial Enumeration. COODBSE (1994)
Gregory Butler
Datalog and TwoGroups and C++. AISMC (1994)
Gregory Butler, John J. Cannon
On Holt's Algorithm. J. Symb. Comput. 15 (2) (1993)
Gregory Butler
The Transitive Groups of Degree Fourteen and Fifteen. J. Symb. Comput. 16 (5) (1993)
Frank Ng, Gregory Butler
Specialised Theorem-Proving in an Intelligent Tutoring System for the Dijkstra-Gries Programming Methodology. ICCI (1993)
Gregory Butler
Experimental Comparison of Algorithms for Sylow Subgroups. ISSAC (1992)
Gregory Butler
The Progress Towards an Intelligent Assistent - A Discussion Paper. AISMC (1992)
Gregory Butler, Sridhar S. Iyer, Susan H. Ley
A Deductive Database of the Groups of Order Dividing 128. ISSAC (1991)
Gregory Butler
Implementing Some Algorithms of Kantor. AAECC (1991)
Gregory Butler, Sridhar S. Iyer
Towards a deductive database for small simple groups. SIGSAM Bull. 25 (4) (1991)
Gregory Butler, John J. Cannon
Computing Sylow Subgroups of Permutation Groups Using Homomorphic Images of Centralizers. J. Symb. Comput. 12 (4/5) (1991)
Gregory Butler, John J. Cannon
The Design of Cayley - a Language for Modern Algebra. DISCO (1990)
Gregory Butler, Sridhar S. Iyer
Deductive Mathematical Databases - A Case Study. SSDBM (1990)
Gregory Butler, John J. Cannon
Computing in Permutation and Matrix Groups III: Sylow Subgroups. J. Symb. Comput. 8 (3) (1989)
Gregory Butler
A Proof of Holt's Algorithm. J. Symb. Comput. 5 (3) (1988)
Gregory Butler, John J. Cannon
Cayley, Version 4: The User Language. ISSAC (1988)
Gregory Butler, Matthew J. Kendall
The Suitability for Master/Slave Concurrency of Concurrent Euclid, Ada and Modula. Softw. Pract. Exp. 17 (2) (1987)
Gregory Butler
An improvement to the centralizer algorithm for permutation groups. SIGSAM Bull. 19 (2) (1985)
Gregory Butler, Clement W. H. Lam
A General Backtrack Algorithm for the Isomorphism Problem of Combinatorial Objects. J. Symb. Comput. 1 (4) (1985)
Gregory Butler
Effective Computation with Group Homomorphisms. J. Symb. Comput. 1 (2) (1985)
Gregory Butler
Computing Normalizers in Permutation Groups. J. Algorithms 4 (2) (1983)
Gregory Butler
Double cosets and searching small groups. SYMSACC (1981)