Koen Bertels

ORCID

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 88

Top Venues

CoRR

DATE

BIBE

Conf. Computing Frontiers

Publications

Hongfeng Zhang, Aritra Sarkar, Koen Bertels
A resource-efficient variational quantum algorithm for mRNA codon optimization. CoRR (2024)
Kourosh Sayar Dogahe, Tamara Sarac, Delphine De Smedt, Koen Bertels
"Toward" Metal-Organic Framework Design by Quantum Computing. CoRR (2023)
Aritra Sarkar, Zaid Al-Ars, Koen Bertels
QKSA: Quantum Knowledge Seeking Agent. AGI (2022)
Nader Khammassi, Imran Ashraf, J. van Someren, Razvan Nane, A. M. Krol, M. A. Rol, Lingling Lao, Koen Bertels, Carmen G. Almudéver
OpenQL: A Portable Quantum Programming Framework for Quantum Accelerators. ACM J. Emerg. Technol. Comput. Syst. 18 (1) (2022)
Koen Bertels, Aritra Sarkar, Imran Ashraf
Quantum Computing - From NISQ to PISQ. IEEE Micro 41 (5) (2021)
Koen Bertels, Aritra Sarkar, Imran Ashraf
Quantum Computing - from NISQ to PISQ. CoRR (2021)
A. M. Krol, Aritra Sarkar, Imran Ashraf, Zaid Al-Ars, Koen Bertels
Efficient decomposition of unitary matrices in quantum circuit compilers. CoRR (2021)
Koen Bertels, Aritra Sarkar, A. M. Krol, R. Budhrani, J. Samadi, E. Geoffroy, J. Matos, R. Abreu, G. Gielen, Imran Ashraf
Quantum Accelerator Stack: A Research Roadmap. CoRR (2021)
Thomas Hubregtsen, Josef Pichlmeier, Patrick Stecher, Koen Bertels
Evaluation of parameterized quantum circuits: on the relation between classification accuracy, expressibility, and entangling capability. Quantum Mach. Intell. 3 (1) (2021)
Alberto Bosio, Ian O'Connor, Marcello Traiola, Jorge Echavarria, Jürgen Teich, Muhammad Abdullah Hanif, Muhammad Shafique, Said Hamdioui, Bastien Deveautour, Patrick Girard, Arnaud Virazel, Koen Bertels
. ETS (2021)
Aritra Sarkar, Zaid Al-Ars, Harshitta Gandhi, Koen Bertels
QKSA: Quantum Knowledge Seeking Agent - resource-optimized reinforcement learning using quantum process tomography. CoRR (2021)
Nauman Ahmed, Koen Bertels, Zaid Al-Ars
Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads. ICBBB (2020)
Aritra Sarkar, Zaid Al-Ars, Koen Bertels
Quantum Accelerated Estimation of Algorithmic Information. CoRR (2020)
Aritra Sarkar, Zaid Al-Ars, Koen Bertels
QuASeR - Quantum Accelerated De Novo DNA Sequence Reconstruction. CoRR (2020)
Koen Bertels, Aritra Sarkar, Thomas Hubregtsen, M. Serrao, Abid A. Mouedenne, Amitabh Yadav, A. M. Krol, Imran Ashraf
Quantum Computer Architecture: Towards Full-Stack Quantum Accelerators. DATE (2020)
Jintao Yu, Razvan Nane, Imran Ashraf, Mottaqiallah Taouil, Said Hamdioui, Henk Corporaal, Koen Bertels
Skeleton-Based Synthesis Flow for Computation-in-Memory Architectures. IEEE Trans. Emerg. Top. Comput. 8 (2) (2020)
Savvas Varsamopoulos, Koen Bertels, Carmen G. Almudéver
Decoding surface code with a distributed neural network-based decoder. Quantum Mach. Intell. 2 (1) (2020)
Savvas Varsamopoulos, Koen Bertels, Carmen García Almudéver
Comparing Neural Network Based Decoders for the Surface Code. IEEE Trans. Computers 69 (2) (2020)
Aritra Sarkar, Koen Bertels
ACSS-q: Algorithmic complexity for short strings via quantum accelerated approach. CoRR (2020)
Nader Khammassi, Imran Ashraf, J. van Someren, Razvan Nane, A. M. Krol, M. Adriaan Rol, Lingling Lao, Koen Bertels, Carmen G. Almudéver
OpenQL : A Portable Quantum Programming Framework for Quantum Accelerators. CoRR (2020)
Thomas Hubregtsen, Christoph Segler, Josef Pichlmeier, Aritra Sarkar, Thomas Gabor, Koen Bertels
Integration and Evaluation of Quantum Accelerators for Data-Driven User Functions. ISQED (2020)
Thomas Hubregtsen, Josef Pichlmeier, Koen Bertels
Evaluation of Parameterized Quantum Circuits: on the design, and the relation between classification accuracy, expressibility and entangling capability. CoRR (2020)
Nauman Ahmed, Tong Dong Qiu, Koen Bertels, Zaid Al-Ars
GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads. BMC Bioinform. (13) (2020)
Aritra Sarkar, Zaid Al-Ars, Carmen G. Almudéver, Koen Bertels
An algorithm for DNA read alignment on quantum accelerators. CoRR (2019)
Xiang Fu, Lingling Lao, Koen Bertels, Carmen G. Almudéver
A control microarchitecture for fault-tolerant quantum computing. Microprocess. Microsystems 70 (2019)
Patsy Cadareanu, N. Reddy C, Carmen G. Almudéver, A. Khanna, Arijit Raychowdhury, Suman Datta, Koen Bertels, Vijayakrishan Narayanan, Massimiliano Di Ventra, Pierre-Emmanuel Gaillardon
Rebooting Our Computing Models. DATE (2019)
Thomas Hubregtsen, Christoph Segler, Josef Pichlmeier, Aritra Sarkar, Thomas Gabor, Koen Bertels
Integration and Evaluation of Quantum Accelerators for Data-Driven User Functions. CoRR (2019)
Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
Correction to: GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC Bioinform. 20 (1) (2019)
Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC Bioinform. 20 (1) (2019)
Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars
GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller. BMC Genom. 20 (S2) (2019)
Leon Riesebos, Xiang Fu, A. A. Moueddenne, Lingling Lao, Savvas Varsamopoulos, Imran Ashraf, J. van Someren, Nader Khammassi, Carmen G. Almudéver, Koen Bertels
Quantum Accelerated Computer Architectures. ISCAS (2019)
Xiang Fu, Leon Riesebos, M. A. Rol, Jeroen van Straten, J. van Someren, Nader Khammassi, Imran Ashraf, R. F. L. Vermeulen, V. Newsum, K. K. L. Loh, J. C. de Sterke, W. J. Vlothuizen, R. N. Schouten, Carmen G. Almudéver, Leonardo DiCarlo, Koen Bertels
eQASM: An Executable Quantum Instruction Set Architecture. HPCA (2019)
Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths. Comput. Biol. Chem. 75 (2018)
Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars
An Efficient GPU-Based de Bruijn Graph Construction Algorithm for Micro-Assembly. BIBE (2018)
Xiang Fu, M. A. Rol, Cornelis Christiaan Bultink, J. van Someren, Nader Khammassi, Imran Ashraf, R. F. L. Vermeulen, J. C. de Sterke, W. J. Vlothuizen, R. N. Schouten, Carmen G. Almudéver, Leonardo DiCarlo, Koen Bertels
A Microarchitecture for a Superconducting Quantum Processor. IEEE Micro 38 (3) (2018)
Imran Ashraf, Nader Khammassi, Mottaqiallah Taouil, Koen Bertels
Memory and Communication Profiling for Accelerator-Based Platforms. IEEE Trans. Computers 67 (7) (2018)
Yehuda Naveh, Elham Kashefi, James R. Wootton, Koen Bertels
Theoretical and practical aspects of verification of quantum computers. DATE (2018)
Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. BIBE (2018)
Lei Xie, Hoang Anh Du Nguyen, Mottaqiallah Taouil, Said Hamdioui, Koen Bertels
A Mapping Methodology of Boolean Logic Circuits on Memristor Crossbar. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 37 (2) (2018)
Carmen G. Almudéver, Nader Khammassi, Louis Hutin, Maud Vinet, Masoud Babaie, Fabio Sebastiano, Edoardo Charbon, Koen Bertels
Towards a scalable quantum computer. DTIS (2018)
Xiang Fu, Leon Riesebos, M. A. Rol, Jeroen van Straten, J. van Someren, Nader Khammassi, Imran Ashraf, R. F. L. Vermeulen, V. Newsum, K. K. L. Loh, J. C. de Sterke, W. J. Vlothuizen, R. N. Schouten, Carmen G. Almudéver, Leonardo DiCarlo, Koen Bertels
eQASM: An Executable Quantum Instruction Set Architecture. CoRR (2018)
Erik Vermij, Leandro Fiorin, Rik Jongerius, Christoph Hagleitner, Jan van Lunteren, Koen Bertels
An Architecture for Integrated Near-Data Processors. ACM Trans. Archit. Code Optim. 14 (3) (2017)
Shanshan Ren, Koen Bertels, Zaid Al-Ars
GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization. BIBE (2017)
Leon Riesebos, Xiang Fu, Savvas Varsamopoulos, Carmen G. Almudéver, Koen Bertels
Pauli Frames for Quantum Computer Architectures. DAC (2017)
Philip Heng Wai Leong, Hideharu Amano, Jason Helge Anderson, Koen Bertels, João M. P. Cardoso, Oliver Diessel, Guy Gogniat, Mike Hutton, JunKyu Lee, Wayne Luk, Patrick Lysaght, Marco Platzner, Viktor K. Prasanna, Tero Rissa, Cristina Silvano, Hayden Kwok-Hay So, Yu Wang
The First 25 Years of the FPL Conference: Significant Papers. ACM Trans. Reconfigurable Technol. Syst. 10 (2) (2017)
Nauman Ahmed, Koen Bertels, Zaid Al-Ars
Predictive Genome Analysis Using Partial DNA Sequencing Data. BIBE (2017)
Erik Vermij, Leandro Fiorin, Christoph Hagleitner, Koen Bertels
Sorting big data on heterogeneous near-data processing systems. Conf. Computing Frontiers (2017)
Prashant D. Joshi, D. Frank Hsu, Arunabha Sen, Said Hamdioui, Koen Bertels
Tight Bounds in Message Delays Despite Faults in a Class of Line Digraph Networks. ISPAN-FCST-ISCC (2017)
Nauman Ahmed, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
GPU accelerated API for alignment of genomics sequencing data. BIBM (2017)
Said Hamdioui, Shahar Kvatinsky, Gert Cauwenberghs, Lei Xie, Nimrod Wald, Siddharth Joshi, Hesham Mostafa Elsayed, Henk Corporaal, Koen Bertels
Memristor for computing: Myth or reality? DATE (2017)
Carmen G. Almudéver, Lingling Lao, Xiang Fu, Nader Khammassi, Imran Ashraf, Dan Iorga, Savvas Varsamopoulos, Christopher Eichler, A. Wallraff, Lotte Geck, Andre Kruth, Joachim Knoch, Hendrik Bluhm, Koen Bertels
The engineering challenges in quantum computing. DATE (2017)
Hoang Anh Du Nguyen, Lei Xie, Mottaqiallah Taouil, Razvan Nane, Said Hamdioui, Koen Bertels
On the Implementation of Computation-in-Memory Parallel Adder. IEEE Trans. Very Large Scale Integr. Syst. 25 (8) (2017)
Xiang Fu, Michiel Adriaan Rol, Cornelis Christiaan Bultink, J. van Someren, Nader Khammassi, Imran Ashraf, R. F. L. Vermeulen, J. C. de Sterke, W. J. Vlothuizen, R. N. Schouten, Carmen G. Almudéver, Leonardo DiCarlo, Koen Bertels
An experimental microarchitecture for a superconducting quantum processor. MICRO (2017)
Nader Khammassi, Imran Ashraf, Xiang Fu, Carmen G. Almudéver, Koen Bertels
QX: A high-performance quantum computer simulation platform. DATE (2017)
Erik Vermij, Leandro Fiorin, Christoph Hagleitner, Koen Bertels
Boosting the Efficiency of HPCG and Graph500 with Near-Data Processing. ICPP (2017)
Prashant D. Joshi, Arunabha Sen, D. Frank Hsu, Said Hamdioui, Koen Bertels
Region based containers - A new paradigm for the analysis of fault tolerant networks. DFT (2017)
Xiang Fu, M. A. Rol, Cornelis Christiaan Bultink, J. van Someren, Nader Khammassi, Imran Ashraf, R. F. L. Vermeulen, J. C. de Sterke, W. J. Vlothuizen, R. N. Schouten, Carmen G. Almudéver, Leonardo DiCarlo, Koen Bertels
An Experimental Microarchitecture for a Superconducting Quantum Processor. CoRR (2017)
Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing. ARCS (2016)
Xiang Fu, Leon Riesebos, Lingling Lao, Carmen G. Almudéver, Fabio Sebastiano, R. Versluis, Edoardo Charbon, Koen Bertels
A heterogeneous quantum computer architecture. Conf. Computing Frontiers (2016)
Hoang Anh Du Nguyen, Lei Xie, Mottaqiallah Taouil, Said Hamdioui, Koen Bertels
Synthesizing HDL to memristor technology: A generic framework. NANOARCH (2016)
Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
An Efficient GPUAccelerated Implementation of Genomic Short Read Mapping with BWAMEM. SIGARCH Comput. Archit. News 44 (4) (2016)
Valery Kritchallo, Billy Braithwaite, Erik Vermij, Koen Bertels, Zaid Al-Ars
Balancing High-Performance Parallelization and Accuracy in Canny Edge Detector. ARCS (2016)
Lei Xie, Hoang Anh Du Nguyen, Mottaqiallah Taouil, Said Hamdioui, Koen Bertels
Boolean logic gate exploration for memristor crossbar. DTIS (2016)
Adib Haron, Jintao Yu, Razvan Nane, Mottaqiallah Taouil, Said Hamdioui, Koen Bertels
Parallel matrix multiplication on memristor-based computation-in-memory architecture. HPCS (2016)
Harald Homulle, Stefan Visser, Bishnu Patra, Giorgio Ferrari, Enrico Prati, Carmen G. Almudéver, Koen Bertels, Fabio Sebastiano, Edoardo Charbon
CryoCMOS hardware technology a classical infrastructure for a scalable quantum computer. Conf. Computing Frontiers (2016)
Jintao Yu, Razvan Nane, Adib Haron, Said Hamdioui, Henk Corporaal, Koen Bertels
Skeleton-based design and simulation flow for Computation-in-Memory architectures. NANOARCH (2016)
Lei Xie, Hoang Anh Du Nguyen, Mottaqiallah Taouil, Said Hamdioui, Koen Bertels, Mohammad AlFailakawi
Non-volatile look-up table based FPGA implementations. IDT (2016)
Razvan Nane, Vlad Mihai Sima, Christian Pilato, Jongsok Choi, Blair Fort, Andrew Canis, Yu Ting Chen, Hsuan Hsiao, Stephen Dean Brown, Fabrizio Ferrandi, Jason Helge Anderson, Koen Bertels
A Survey and Evaluation of FPGA High-Level Synthesis Tools. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 35 (10) (2016)
Nauman Ahmed, Koen Bertels, Zaid Al-Ars
A comparison of seed-and-extend techniques in modern DNA read alignment algorithms. BIBM (2016)
Shanshan Ren, Koen Bertels, Zaid Al-Ars
Exploration of alternative GPU implementations of the pair-HMMs forward algorithm. BIBM (2016)
Dan Iorga, Razvan Nane, Yi Lu, Edwin van Dalen, Koen Bertels
An Image Processing VLIW Architecture for Real-Time Depth Detection. SBAC-PAD (2016)
Erik Vermij, Christoph Hagleitner, Leandro Fiorin, Rik Jongerius, Jan van Lunteren, Koen Bertels
An architecture for near-data processing systems. Conf. Computing Frontiers (2016)
Ernst Joachim Houtgast, Vlad Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars
Power-efficiency analysis of accelerated BWA-MEM implementations on heterogeneous computing platforms. ReConFig (2016)
Ernst Joachim Houtgast, Vlad Mihai Sima, Giacomo Marchiori, Koen Bertels, Zaid Al-Ars
Power-Efficient Accelerated Genomic Short Read Mapping on Heterogeneous Computing Platforms. FCCM (2016)
Imran Ashraf, Koen Bertels, Nader Khammassi, Jean-Christophe Le Lann
Communication-Aware Parallelization Strategies for High Performance Applications. ISVLSI (2015)
Koen Bertels
Quantum computing: How far away is it? HPCS (2015)
Imran Ashraf, Mottaqiallah Taouil, Koen Bertels
Memory profiling for intra-application data-communication quantification: A survey. IDT (2015)
Diana Goehringer, Marco D. Santambrogio, João M. P. Cardoso, Koen Bertels
Guest Editorial ARC 2014. ACM Trans. Reconfigurable Technol. Syst. 9 (1) (2015)
Lei Xie, Hoang Anh Du Nguyen, Mottaqiallah Taouil, Said Hamdioui, Koen Bertels
Interconnect networks for memristor crossbar. NANOARCH (2015)
Erik Vermij, Leandro Fiorin, Rik Jongerius, Christoph Hagleitner, Koen Bertels
Challenges in exascale radio astronomy: Can the SKA ride the technology wave? Int. J. High Perform. Comput. Appl. 29 (1) (2015)
Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars
An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm. SAMOS (2015)
Cuong Pham-Quoc, Imran Ashraf, Zaid Al-Ars, Koen Bertels
Heterogeneous Hardware Accelerators with Hybrid Interconnect: An Automated Design Approach. ACOMP (2015)
Said Hamdioui, Lei Xie, Hoang Anh Du Nguyen, Mottaqiallah Taouil, Koen Bertels, Henk Corporaal, Hailong Jiao, Francky Catthoor, Dirk J. Wouters, Eike Linn, Jan van Lunteren
Memristor based computation-in-memory architecture for data-intensive applications. DATE (2015)
Philip Heng Wai Leong, Hideharu Amano, Jason Helge Anderson, Koen Bertels, João M. P. Cardoso, Oliver Diessel, Guy Gogniat, Mike Hutton, JunKyu Lee, Wayne Luk, Patrick Lysaght, Marco Platzner, Viktor K. Prasanna, Tero Rissa, Cristina Silvano, Hayden Kwok-Hay So, Yu Wang
Significant papers from the first 25 years of the FPL conference. FPL (2015)
Lei Xie, Hoang Anh Du Nguyen, Mottaqiallah Taouil, Koen Bertels, Said Hamdioui
Fast boolean logic mapped on memristor crossbar. ICCD (2015)
Hoang Anh Du Nguyen, Lei Xie, Mottaqiallah Taouil, Razvan Nane, Said Hamdioui, Koen Bertels
Computation-in-memory based parallel adder. NANOARCH (2015)
Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
Calculation of worst-case execution time for multicore processors using deterministic execution. PATMOS (2015)
Nauman Ahmed, Vlad Mihai Sima, Ernst Houtgast, Koen Bertels, Zaid Al-Ars
Heterogeneous Hardware/Software Acceleration of the BWA-MEM DNA Alignment Algorithm. ICCAD (2015)
Mark de Jong, Vlad Mihai Sima, Koen Bertels, David Thomas
FPGA-accelerated Monte-Carlo integration using stratified sampling and Brownian bridges. FPT (2014)
Chao Wang, Xi Li, Xuehai Zhou, Yunji Chen, Koen Bertels
Co-processing with dynamic reconfiguration on heterogeneous MPSoC: practices and design tradeoffs (abstract only). FPGA (2014)
Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
Efficent and highly portable deterministic multithreading (DetLock). Computing 96 (12) (2014)
Razvan Nane, Vlad Mihai Sima, Cuong Pham-Quoc, Fernando M. Gonçalves, Koen Bertels
High-Level Synthesis in the Delft Workbench Hardware/Software Co-design Tool-Chain. EUC (2014)
Erik Vermij, Leandro Fiorin, Christoph Hagleitner, Koen Bertels
Exascale Radio Astronomy: Can We Ride the Technology Wave? ISC (2014)
Cuong Pham-Quoc, Zaid Al-Ars, Koen Bertels
Automated Hybrid Interconnect Design for FPGA Accelerators Using Data Communication Profiling. IPDPS Workshops (2014)
Prashant D. Joshi, Arunabha Sen, Said Hamdioui, Koen Bertels
Region Disjoint Paths in a Class of Optimal Line Graph Networks. CSE (2014)
Giovanni Mariani, Gianluca Palermo, Roel Meeuws, Vlad Mihai Sima, Cristina Silvano, Koen Bertels
DRuiD: Designing reconfigurable architectures with decision-making support. ASP-DAC (2014)
Hamid Mushtaq, Zaid Al-Ars, Koen Bertels
Accurate and efficient identification of worst-case execution time for multicore processors: A survey. IDT (2013)
Giovanni Mariani, Vlad Mihai Sima, Gianluca Palermo, Vittorio Zaccaria, Giacomo Marchiori, Cristina Silvano, Koen Bertels
Run-time optimization of a dynamically reconfigurable embedded system through performance prediction. FPL (2013)
João M. P. Cardoso, Tiago Carvalho, José Gabriel F. Coutinho, Ricardo Nobre, Razvan Nane, Pedro C. Diniz, Zlatko Petrov, Wayne Luk, Koen Bertels
Controlling a complete hardware synthesis toolchain with LARA aspects. Microprocess. Microsystems 37 (8-C) (2013)
Imran Ashraf, Sayyed Arash Ostadzadeh, Roel Meeuws, Koen Bertels
Evaluation Methodology for Data Communication-Aware Application Partitioning. Euro-Par Workshops (2013)

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Publication Activity (10 Years)

Top Topics

Top Venues

Koen Bertels