Exploration of alternative GPU implementations of the pair-HMMs forward algorithm.
Shanshan RenKoen BertelsZaid Al-ArsPublished in: BIBM (2016)
Keyphrases
- experimental evaluation
- detection algorithm
- matching algorithm
- preprocessing
- pairwise
- expectation maximization
- learning algorithm
- high accuracy
- theoretical analysis
- significant improvement
- k means
- optimal solution
- objective function
- times faster
- tree structure
- parallel implementation
- particle swarm optimization
- dynamic programming
- probabilistic model
- np hard
- input data
- real time
- optimization algorithm
- hidden markov models
- search space
- computational complexity
- similarity measure
- decision trees
- bi directional