GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller.

Shanshan Ren Nauman Ahmed Koen Bertels Zaid Al-Ars

Published in: BMC Genom. (2019)

Keyphrases

gpu accelerated
sequence alignment
pairwise
dynamic programming
protein sequences
ddos attacks
phylogenetic analysis
amino acids
binding sites
multiple sequence alignment
multiple alignment
neural network
genetic algorithm
similarity measure
learning process
sample size