An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm.
Ernst Joachim HoutgastVlad Mihai SimaKoen BertelsZaid Al-ArsPublished in: SAMOS (2015)
Keyphrases
- detection algorithm
- computational complexity
- systolic array
- optimization algorithm
- np hard
- mapping function
- search space
- optimal solution
- learning algorithm
- k means
- cost function
- dynamic programming
- worst case
- image processing
- preprocessing
- genetic algorithm
- probabilistic model
- object oriented
- simulated annealing
- segmentation algorithm
- objective function