John F. McDonald

Publication Activity (10 Years)

Years Active: 1972-2020
Publications (10 Years): 2

Top Topics

Gene Expression

Transcriptional Regulation

Top Venues

BMC Syst. Biol.

IEEE Trans. Circuits Syst. II Express Briefs

Publications

Evan A. Clayton, Toyya A. Pujol, John F. McDonald, Peng Qiu
Leveraging TCGA gene expression data to build predictive models for cancer drug response. BMC Bioinform. (14) (2020)
Andrew Haslam, Kurt M. English, Alexander Derrickson, John F. McDonald
Automated Verification and Optimization of SFQ Superconducting Circuits. IEEE Access 7 (2019)
Ryan Clarke, Mitchell R. LeRoy, Srikumar Raman, Tuhin Guha Neogi, Russell P. Kraft, John F. McDonald
140 Gb/s Serializer Using Clock Doublers in 90 nm SiGe Technology. IEEE J. Solid State Circuits 50 (11) (2015)
Ryan Clarke, Philip Jacob, Okan Erdogan, Paul Belemijian, Srikumar Raman, Mitchell R. LeRoy, Tuhin Guha Neogi, Russell P. Kraft, Diana-Andra Borca-Tasciuc, John F. McDonald
Thermal Modeling of 3-D Stacked DRAM Over SiGe HBT BiCMOS CPU. IEEE Access 3 (2015)
Mitchell R. LeRoy, Srikumar Raman, Michael Chu, Jin Woo Kim, Jong-Ru Guo, Kuan Zhou, Chao You, Ryan Clarke, Bryan S. Goda, John F. McDonald
High-Speed Reconfigurable Circuits for Multirate Systems in SiGe HBT Technology. Proc. IEEE 103 (7) (2015)
Christopher G. Hill, Lilya V. Matyunina, L. DeEtte Walker, Benedict B. Benigno, John F. McDonald
Transcriptional override: a regulatory network model of indirect responses to modulations in microRNA expression. BMC Syst. Biol. 8 (2014)
Kathleen A. Vermeersch, Lijuan Wang, John F. McDonald, Mark P. Styczynski
Distinct metabolic responses of an ovarian cancer stem cell line. BMC Syst. Biol. 8 (2014)
Xuelian Liu, Srikumar Raman, Ryan Clarke, Mitchell R. LeRoy, Okan Erdogan, Michael Chu, Alexey Gutin, Russell P. Kraft, John F. McDonald
Design of High-Speed Register Files Using SiGe HBT BiCMOS Technology. IEEE Trans. Circuits Syst. II Express Briefs (3) (2014)
Xuelian Liu, Mitchell R. LeRoy, Ryan Clarke, Michael Chu, H. O. Aquino, Srikumar Raman, Aamir Zia, Russell P. Kraft, John F. McDonald
Design of BiCMOS SRAMs for high-speed SiGe applications. IET Circuits Devices Syst. 8 (6) (2014)
Xuelian Liu, John F. McDonald
A Wide Band Locking Range Quarter-PhaseGenerator PLL Using 0.13um BiCMOS Technology. ISVLSI (2012)
Xuelian Liu, Aamir Zia, Mitchell R. LeRoy, Srikumar Raman, Ryan Clarke, Russell P. Kraft, John F. McDonald
A three-dimensional DRAM using floating body cell in FDSOI devices. DDECS (2012)
Alexey Gutin, Philip Jacob, Michael Chu, Paul M. Belemjian, Mitchell R. LeRoy, Russell P. Kraft, John F. McDonald
Carry Chains for Ultra High-Speed SiGe HBT Adders. IEEE Trans. Circuits Syst. I Regul. Pap. (9) (2011)
Jin Woo Kim, Michael Chu, Philip Jacob, Aamir Zia, Russell P. Kraft, John F. McDonald
Reconfigurable 40 GHz BiCMOS uniform delay crossbar switch for broadband and wide tuning range narrowband applications. IET Circuits Devices Syst. 5 (3) (2011)
Michael Chu, Philip Jacob, Jin Woo Kim, Mitchell R. LeRoy, Russell P. Kraft, John F. McDonald
A 40 Gs/s Time Interleaved ADC Using SiGe BiCMOS Technology. IEEE J. Solid State Circuits 45 (2) (2010)
Michael Chu, Philip Jacob, Jin Woo Kim, Mitchell R. LeRoy, Russell P. Kraft, John F. McDonald
Correction to "A 40 GS/s Time Interleaved ADC Using SiGe BiCMOS Technology". IEEE J. Solid State Circuits 45 (10) (2010)
Aamir Zia, Philip Jacob, Jin Woo Kim, Michael Chu, Russell P. Kraft, John F. McDonald
A 3-D Cache With Ultra-Wide Data Bus for 3-D Processor-Memory Integration. IEEE Trans. Very Large Scale Integr. Syst. 18 (6) (2010)
Wei Guan, Manshui Zhou, Christina Y. Hampton, Benedict B. Benigno, L. DeEtte Walker, Alexander G. Gray, John F. McDonald, Facundo M. Fernández
Ovarian cancer detection from metabolomic liquid chromatography/mass spectrometry data by support vector machines. BMC Bioinform. 10 (2009)
John F. McDonald, Okan Erdogan, Philip Jacob, Paul M. Belemjian, Alexey Gutin, Aamir Zia, Michael Chu, Jin Woo Kim, Ryan Clarke, Nate DeSimone, Sherry Liu, Russell P. Kraft
Thermal analysis for a SiGe HBT 40 watt 32 GHz clock 3D memory processor chip stack using diamond heat spreader layers. 3DIC (2009)
Kuan Zhou, John F. McDonald
Impact of Deep-Trench-Isolation-Sharing Techniques on Ultrahigh-Speed Digital Systems. IEEE Trans. Circuits Syst. II Express Briefs (10) (2009)
Philip Jacob, Aamir Zia, Okan Erdogan, Paul M. Belemjian, Jin Woo Kim, Michael Chu, Russell P. Kraft, John F. McDonald, Kerry Bernstein
Mitigating Memory Wall Effects in High-Clock-Rate and Multicore CMOS 3-D Processor Memory Stacks. Proc. IEEE 97 (1) (2009)
Young Uk Yim, Peter F. Curran, Michael Chu, John F. McDonald, Russell P. Kraft
52 Gb/s 16: 1 transmitter in 0.13 μm SiGe BiCMOS technology. IET Circuits Devices Syst. 1 (6) (2007)
Jong-Ru Guo, Chao You, Mike Chu, Peter F. Curran, Jiedong Diao, Bryan S. Goda, Peng Jin, Russell P. Kraft, John F. McDonald
Silicon germanium programmable circuits for gigahertz applications. IET Circuits Devices Syst. 1 (1) (2007)
Chao You, Jong-Ru Guo, Russell P. Kraft, Michael Chu, Bryan S. Goda, John F. McDonald
A 12-Gb/s DEMUX Implemented With SiGe High-Speed FPGA Circuits. IEEE Trans. Very Large Scale Integr. Syst. 15 (9) (2007)
Philip Jacob, Aamir Zia, Okan Erdogan, Paul M. Belemjian, Peng Jin, Jin Woo Kim, Michael Chu, Russell P. Kraft, John F. McDonald
Amdahl's figure of merit, SiGe HBT BiCMOS, and 3D chip stacking. ICCD (2007)
Kuan Zhou, Yifei Luo, Sizhong Chen, Allen Drake, John F. McDonald, Tong Zhang
Triple-rail MOS current mode logic for high-speed self-timed pipeline applications. ISCAS (2006)
Jong-Ru Guo, Chao You, Kuan Zhou, Michael Chu, Peter F. Curran, Jiedong Diao, Bryan S. Goda, Russell P. Kraft, John F. McDonald
A 10 GHz 4: 1 MUX and 1: 4 DEMUX implemented by a Gigahertz SiGe FPGA for fast ADC. Integr. 38 (3) (2005)
Young Uk Yim, John F. McDonald, Russell P. Kraft
12-23 GHz Ultra Wide Tuning Range Voltage-Controlled Ring Oscillator with Hybrid Control Schemes. ISVLSI (2005)
Philip Jacob, Okan Erdogan, Aamir Zia, Paul M. Belemjian, Russell P. Kraft, John F. McDonald
Predicting the Performance of a 3D Processor-Memory Chip Stack. IEEE Des. Test Comput. 22 (6) (2005)
Kuan Zhou, John F. McDonald
Multi-GHz SiGe design methodologies for reconfigurable computing. ACM Great Lakes Symposium on VLSI (2005)
Chao You, Jong-Ru Guo, Michael Chu, Russell P. Kraft, Bryan S. Goda, John F. McDonald
A 11 GHz FPGA with Test Applications. FPL (2005)
Paul M. Belemjian, Okan Erdogan, Russell P. Kraft, John F. McDonald
SiGe HBT Microprocessor Core Test Vehicle. Proc. IEEE 93 (9) (2005)
Kuan Zhou, Jong-Ru Guo, Chao You, John Mayega, Russell P. Kraft, T. Zhang, John F. McDonald, Bryan S. Goda
Multi-ghz Sige Bicmos Fpgas with New Architecture and Novel Power Management Techniques. J. Circuits Syst. Comput. 14 (2) (2005)
Chao You, Jong-Ru Guo, Russell P. Kraft, Michael Chu, Peter F. Curran, Kuan Zhou, Bryan S. Goda, John F. McDonald
A 5-10GHz SiGe BiCMOS FPGA with new configurable logic block. Microprocess. Microsystems 29 (2-3) (2005)
Jong-Ru Guo, Chao You, Michael Chu, Okan Erdogan, Russell P. Kraft, John F. McDonald
A High Speed Reconfigurable Gate Array for Gigahertz Applications. ISVLSI (2005)
Jong-Ru Guo, Chao You, Michael Chu, Robert W. Heikaus, Kuan Zhou, Okan Erdogan, Jiedong Diao, Bryan S. Goda, Russell P. Kraft, John F. McDonald
The gigahertz FPGA: design consideration and applications. FPGA (2004)
Jong-Ru Guo, Chao You, Peter F. Curran, Michael Chu, Kuan Zhou, Jiedong Diao, A. George, Russell P. Kraft, John F. McDonald
The 10GHz 4: 1 MUX and 1: 4 DEMUX implemented via the gigahertz SiGe FPGA. ACM Great Lakes Symposium on VLSI (2004)
John Mayega, Okan Erdogan, Paul M. Belemjian, Kuan Zhou, John F. McDonald, Russell P. Kraft
3D direct vertical interconnect microprocessors test vehicle. ACM Great Lakes Symposium on VLSI (2003)
Kuan Zhou, Michael Chu, Chao You, Jong-Ru Guo, Channakeshav, John Mayega, John F. McDonald, Russell P. Kraft, Bryan S. Goda
A four-bit full adder implemented on fast SiGe FPGAs with novel power control scheme. FPGA (2003)
Jong-Ru Guo, Chao You, Kuan Zhou, Bryan S. Goda, Russell P. Kraft, John F. McDonald
A scalable 2 V, 20 GHz FPGA using SiGe HBT BiCMOS technology. FPGA (2003)
Jong-Ru Guo, Chao You, Michael Chu, Kuan Zhou, Young Uk Yim, Robert W. Heikaus, Russell P. Kraft, John F. McDonald
A Novel Multi-Speed, Power Saving Architecture for SiGe HBT FPGA. Engineering of Reconfigurable Systems and Algorithms (2003)
Eugene M. McCarthy, John F. McDonald
LTR_STRUC: a novel search and identification program for LTR retrotransposons. Bioinform. 19 (3) (2003)
Chao You, Jong-Ru Guo, Russell P. Kraft, Kuan Zhou, Michael Chu, John F. McDonald
A 5-20 GHz, low power FPGA implemented by SiGe HBT BiCMOS technology. ACM Great Lakes Symposium on VLSI (2003)
Chao You, Jong-Ru Guo, Russell P. Kraft, Michael Chu, Robert W. Heikaus, Okan Erdogan, Peter F. Curran, Bryan S. Goda, Kuan Zhou, John F. McDonald
Gigahertz FPGA by SiGe BiCMOS Technology for Low Power, High Speed Computing with 3-D Memory. FPL (2003)
Samuel A. Steidl, John F. McDonald
A 32-word by 32-bit three-port bipolar register file implemented using a SiGe HBT BiCMOS technology. IEEE J. Solid State Circuits 37 (2) (2002)
Kuan Zhou, Channakeshav, Michael Chu, Jong-Ru Guo, S.-C. Liu, Russell P. Kraft, Chao You, John F. McDonald
Gigahertz SiGe BiCMOS FPGAs with new architectures and novel power management schemes. FPT (2002)
Channakeshav, Kuan Zhou, Russell P. Kraft, John F. McDonald
Gigahertz FPGAs with New Power Saving Techniques and Decoding Logic. Evolvable Hardware (2002)
Channakeshav, Kuan Zhou, Jong-Ru Guo, Chao You, Bryan S. Goda, Russell P. Kraft, John F. McDonald
Fast SiGe HBT BiCMOS FPGAs with New Architecture and Power Saving Techniques. FPL (2002)
Bryan S. Goda, Russell P. Kraft, Steven R. Carlough, Thomas W. Krawczyk Jr., John F. McDonald
Gigahertz Reconfigurable Computing Using SiGe HBT BiCMOS FPGAs. FPL (2001)
Steven R. Carlough, Robert A. Philhower, Cliff A. Maier, Sam A. Steidl, Pete M. Campbell, Atul Garg, Kyung-Suc Nah, Matthew W. Ernest, James R. Loy, Thomas W. Krawczyk Jr., Peter F. Curran, Russell P. Kraft, Hans J. Greub, John F. McDonald
A 2-GHz clocked AlGaAs/GaAs HBT byte-slice datapath chip. IEEE J. Solid State Circuits 35 (6) (2000)
John F. McDonald, Bryan S. Goda
Reconfigurable FPGA's in the 1-20 GHz Band with HBT BiCMOS. Evolvable Hardware (1999)
Mukkai S. Krishnamoorthy, James Loy, John F. McDonald
Optimal Differential Routing based on Finite State Machine Theory. VLSI Design 1999 (2) (1999)
Atul Garg, Y. L. Le Coz, Hans J. Greub, R. B. Iverson, Robert F. Philhower, Pete M. Campbell, Cliff A. Maier, Sam A. Steidl, Matthew W. Ernest, Russell P. Kraft, Steven R. Carlough, J. W. Perry, Thomas W. Krawczyk Jr., John F. McDonald
Accurate high-speed performance prediction for full differential current-mode logic: the effect of dielectric anisotropy. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 18 (2) (1999)
Pete M. Campbell, Hans J. Greub, Atul Garg, A. Steidl, Steven R. Carlough, Matthew W. Ernest, Robert F. Philhower, Cliff A. Maier, Russell P. Kraft, John F. McDonald
A very wide bandwidth digital VCO using quadrature frequency multiplication and division implemented in AlGaAs/GaAs HBT's. IEEE Trans. Very Large Scale Integr. Syst. 6 (1) (1998)
Chien-Kuo V. Tien, Kelvin Lewis, Hans J. Greub, Tom Tsen, John F. McDonald
Design of a 32 b monolithic microprocessor based on GaAs HMESFET technology. IEEE Trans. Very Large Scale Integr. Syst. 5 (2) (1997)
James Loy, Atul Garg, Mukkai S. Krishnamoorthy, John F. McDonald
Chip Pad Migration is a Key Component to High Performance MCM Design. Great Lakes Symposium on VLSI (1996)
James Loy, Atul Garg, Mukkai S. Krishnamoorthy, John F. McDonald
Differential Routing of MCMs - CIF: The Ideal Bifurcation Medium. ICCD (1994)
Atul Garg, James Loy, Hans J. Greub, John F. McDonald
Design of a package for a high-speed processor made with yield-limited technology. Great Lakes Symposium on VLSI (1994)
James Loy, Atul Garg, Mukkai S. Krishnamoorthy, John F. McDonald
Wiring pitch integrates MCM design domains. Great Lakes Symposium on VLSI (1994)
P. R. Mukund, John F. McDonald
MCM: The High-Performance Electronic Packaging Technology. Computer 26 (4) (1993)
M. Ladjadj, John F. McDonald
Benchmark Runs of the Subscripted D-Algorithm with Observation Path Mergers on the Brglez-Fujiwara Circuits. DAC (1987)
Robert A. Cohen, John W. Woods, Makoto Sanya, John F. McDonald
A video rate architecture for a fully recursive two-dimensional filter. ICASSP (1987)
M. Ladjadj, John F. McDonald, D.-H. Ho, W. Murray Jr.
Use of the subscripted DALG in submodule testing with applications in cellular arrays. DAC (1986)
C. Benmehrez, John F. McDonald
Measured performance of a programmed implementation of the subscripted D-Algorithm. DAC (1983)
John F. McDonald, C. Benmehrez
Test Set Reduction Using the Subscripted D-Algorithm. ITC (1983)
Russell P. Kraft, John F. McDonald, J. Erkes
Homomorphic signal dereverberation for a phased array imaging system. ICASSP (1982)
Russell P. Kraft, John F. McDonald, F. Ahlgren
Minimax optimization of two-dimensional focused nonuniformly spaced arrays. ICASSP (1979)
Franz B. Tuteur, John F. McDonald, Henti Tung
Second-Order Statistical Moments of a Surface Scatter Channel with Multiple Wave Direction and Dispersion. IEEE Trans. Commun. 24 (8) (1976)
John G. Zornig, John F. McDonald
Experimental Measurement of the Second-Order Interfrequency Correlation Function of the Random Surface Scatter Channel. IEEE Trans. Commun. 23 (3) (1975)
Ronald G. Harris, James E. Sustman, John F. McDonald
Controller for a flexible disk. AFIPS National Computer Conference (1974)
John F. McDonald
Fresnel-Corrected Second-Order Interfrequency Correlations for a Surface-Scatter Channel. IEEE Trans. Commun. 22 (2) (1974)
John F. McDonald, Ronald G. Harris, James E. Sustman
Three ECL designs for microprogrammable Writable Control Stores. MICRO (1973)
D. F. Goessling, John F. McDonald
ISPMET: a study in automatic emulator generation. MICRO (1972)