Peng Qiu

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 36

Top Topics

Dimension Reduction

Medical Image Segmentation

Recurrent Neural Networks

Feature Selection

Top Venues

PLoS Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Hong Seo Lim, Peng Qiu
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. PLoS Comput. Biol. 20 (2) (2024)
Ruiyang Ren, Peng Qiu, Yingqi Qu, Jing Liu, Wayne Xin Zhao, Hua Wu, Ji-Rong Wen, Haifeng Wang
BASES: Large-scale Web Search User Simulation with Large Language Model based Agents. CoRR (2024)
Jiahao Lei, Peng Qiu, Zhaoyu Wu, Angang Ding, Jiateng Hu, Jingli Hou, Yihong Jiang, Hongji Pu, Qun Huang, Xing Zhang, Bo Li, Xin Wang, Kaichuang Ye, Zhijue Xu, Xinwu Lu
Integrative multi-omics analyses reveal vesicle transport as a potential target for thoracic aortic aneurysm. Comput. Biol. Medicine 170 (2024)
Wenjing Lu, Jiahao Lei, Peng Qiu, Rui Sheng, Jinhua Zhou, Xinwu Lu, Yang Yang
UPCoL: Uncertainty-Informed Prototype Consistency Learning for Semi-supervised Medical Image Segmentation. MICCAI (4) (2023)
Yi-Gang Chen, Yang-Chi-Dung Lin, Yijun Luo, Xiao-Xuan Cai, Peng Qiu, Shi-Dong Cui, Zhe Wang, Hsi-Yuan Huang, Hsien-Da Huang
Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis. Briefings Bioinform. 24 (3) (2023)
Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. CoRR (2023)
Hong Seo Lim, Peng Qiu
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. J. Comput. Biol. 30 (7) (2023)
Xinling Li, Greg Gibson, Peng Qiu
Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts. Frontiers Bioinform. 3 (2023)
Stephen A. Goss, Robert J. Steininger, Dhruv Narayanan, Daniel V. Olivença, Yutong Sun, Peng Qiu, Jim Amato, Eberhard O. Voit, Walter E. Voit, Eric J. Kildebeck
Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents. CoRR (2023)
Jinyi Xiang, Peng Qiu, Yang Yang
FUSSNet: Fusing Two Sources of Uncertainty for Semi-supervised Medical Image Segmentation. MICCAI (8) (2022)
Zhen Meng, Peng Qiu, Yueming Pan
A contact pressure detection method of isolation switch based on Fiber Bragg Grating. ICCIR (2022)
Hong Seo Lim, Peng Qiu
JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters. PLoS Comput. Biol. 17 (3) (2021)
Peng Qiu, Yixuan Li, Kai Liu, Jinbao Qin, Kaichuang Ye, Tao Chen, Xinwu Lu
Prescreening and treatment of aortic dissection through an analysis of infinite-dimension data. BioData Min. 14 (1) (2021)
Shuting Lin, Jie Zhou, Yiqiong Xiao, Bridget Neary, Yong Teng, Peng Qiu
Identification of Protein Markers Predictive of Drug-Specific Survival Outcome in Cancers. ISBRA (2021)
Congmin Xu, Quoc D. Mac, Qiong Jia, Peng Qiu
Immune-Microbiota Crosstalk Underlying Inflammatory Bowel Disease. ISBRA (2021)
Jose F. Carreño, Peng Qiu
Feature selection algorithms for predicting preeclampsia: A comparative approach. BIBM (2020)
Michael Youmans, John Christian Givhan Spainhour, Peng Qiu
Classification of Antibacterial Peptides Using Long Short-Term Memory Recurrent Neural Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Peng Qiu, Zhenghua Dai, Jianliang Xu, Qinghua Guo, Guangsuo Yu, Fuchen Wang
On-line reset control of a commercial-scale opposed multi-burner coal-water slurry gasification system using dynamic reduced-order model. Comput. Chem. Eng. 143 (2020)
Hong Seo Lim, Madeline E. Smerchansky, Jingxuan Zhou, Paramita Chatterjee, Angela C. Jimenez, Xingyu Yang, Krishnendu Roy, Peng Qiu
Image-based early predictions of functional properties in cell manufacturing. BIBM (2020)
William Pilcher, Xingyu Yang, Anastasia Zhurikhina, Olga Chernaya, Yinghan Xu, Peng Qiu, Denis Tsygankov
Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images. PLoS Comput. Biol. 16 (9) (2020)
Evan A. Clayton, Toyya A. Pujol, John F. McDonald, Peng Qiu
Leveraging TCGA gene expression data to build predictive models for cancer drug response. BMC Bioinform. (14) (2020)
Qinwei Zhuang, Brandon Alexander Holt, Gabriel A. Kwong, Peng Qiu
Deconvolving multiplexed protease signatures with substrate reduction and activity clustering. PLoS Comput. Biol. 15 (9) (2019)
Jing Liu, Dawei Qiu, Xuelan Zhang, Peng Qiu, Yibo Feng, Huifen Li
An Efficient Cell Segmentation Algorithm Based on Unsupervised Clustering and Morphology. BIBM (2019)
Xinyu Zhang, Mo Zhou, Peng Qiu, Yi Huang, Jun Li
Radar and vision fusion for the real-time obstacle detection and identification. Ind. Robot 46 (3) (2019)
Ying Huo, Peng Qiu, Jiyou Zhai, Dajuan Fan, Huanfeng Peng
Multi-objective service composition model based on cost-effective optimization. Appl. Intell. 48 (3) (2018)
Jenny Jeong, Qinwei Zhuang, Mark K. Transtrum, Enlu Zhou, Peng Qiu
Experimental design and model reduction in systems biology. Quant. Biol. 6 (4) (2018)
Ge Zhu, Xu-Ri Yao, Zhibin Sun, Peng Qiu, Chao Wang, Guang-Jie Zhai, Qing Zhao
A High-Speed Imaging Method Based on Compressive Sensing for Sound Extraction Using a Low-Speed Camera. Sensors 18 (5) (2018)
Qian Chen, Peng Qiu, Yi Lu, Haihong Yu, Feng Xu, Kai Tong, Jiazhuo Xuan, Jiayi Wu
Power loss and efficiency analysis of non-isolated weinberg converter. IECON (2017)
Jenny Jeong, Peng Qiu
The relative importance of data points in systems biology and parameter estimation. BIBM (2017)
Andrew Zhao, Denis Tsygankov, Peng Qiu
Graph-based extraction of shape features for leaf classification. GlobalSIP (2017)
John Christian Givhan Spainhour, Juho Lim, Peng Qiu
GDISC: a web portal for integrative analysis of gene-drug interaction for survival in cancer. Bioinform. 33 (9) (2017)
Feng Xu, Yi Lu, Xiaohua Xuan, Peng Qiu, Kai Tong, Jiazhuo Xuan, Qian Chen, Daozhuo Jiang
Research on flexible medium-voltage DC distribution technology based shore-to-ship power supply system. IECON (2017)
Michael Youmans, Christian Spainhour, Peng Qiu
Long short-term memory recurrent neural networks for antibacterial peptide identification. BIBM (2017)
Yi Lu, Jihong Li, Peng Qiu, Huangqing Xiao, Gaoren Liu, Zheng Xu
Comparison of DC fault handling strategies for hybrid HVDC system. IECON (2017)
John Christian Givhan Spainhour, Peng Qiu
Identification of gene-drug interactions that impact patient survival in TCGA. BMC Bioinform. 17 (2016)
Mark K. Transtrum, Peng Qiu
Bridging Mechanistic and Phenomenological Models of Complex Biological Systems. PLoS Comput. Biol. 12 (5) (2016)
Qing Duan, Jianhua Wang, Chunyan Ma, Binshi Gu, Baojian Ji, Peng Qiu, Jun You
Flexible power distribution unit - A novel power electronic transformer development and demonstration for distribution system. IECON (2015)
Yan Xu, Peng Qiu, Badrinath Roysam
Unsupervised Discovery of Subspace Trends. IEEE Trans. Pattern Anal. Mach. Intell. 37 (10) (2015)
Peng Qiu
Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (6) (2014)
Chang-han Rhee, Enlu Zhou, Peng Qiu
An iterative algorithm for sampling from manifolds. WSC (2014)
Yanxun Xu, Xiaofeng Zheng, Yuan Yuan, Marcos R. Estecio, Jean-Pierre Issa, Peng Qiu, Yuan Ji, Shoudan Liang
BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (6) (2014)
Zixing Wang, Peng Qiu, Wenlong Xu, Yin Liu
Spectral feature selection and its application in high dimensional gene expression studies. BCB (2014)
Zixing Wang, F. Anthony San Lucas, Peng Qiu, Yin Liu
Improving the sensitivity of sample clustering by leveraging gene co-expression networks in variable selection. BMC Bioinform. 15 (2014)
Peng Qiu, Sylvia K. Plevritis
TreeVis: A MATLAB-based tool for tree visualization. Comput. Methods Programs Biomed. 109 (1) (2013)
Yan Xu, Michalis A. Savelonas, Peng Qiu, Kristen Trett, William Shain, Badrinath Roysam
Unsupervised inference of arbor morphology progression for microglia from confocal microscope images. ISBI (2013)
Yihua Liu, Yuan Ji, Peng Qiu
Identification of thresholds for dichotomizing DNA methylation data. EURASIP J. Bioinform. Syst. Biol. 2013 (2013)
Peng Qiu
Toward exhaustive gating of flow cytometry data. GENSiPS (2012)
Peng Qiu, Li Zhang
Identification of markers associated with global changes in DNA methylation regulation in cancers. BMC Bioinform. 13 (S-13) (2012)
Yihua Liu, Peng Qiu
Integrative analysis of methylation and gene expression data in TCGA. GENSiPS (2012)
Mark K. Transtrum, Peng Qiu
Optimal experiment selection for parameter estimation in biological differential equation models. BMC Bioinform. 13 (2012)
Michael D. Linderman, Zach Bjornson, Erin F. Simonds, Peng Qiu, Robert V. Bruggner, Ketaki Sheode, Teresa H. Meng, Sylvia K. Plevritis, Garry P. Nolan
CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. Bioinform. 28 (18) (2012)
Peng Qiu, Sylvia K. Plevritis
Reconstructing Directed Signed Gene Regulatory Network From Microarray Data. IEEE Trans. Biomed. Eng. 58 (12) (2011)
Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis
Discovering Biological Progression Underlying Microarray Samples. PLoS Comput. Biol. 7 (4) (2011)
Yun Zhang, Yujun Feng, Di Wu, Chenxi Hou, Peng Qiu
Dynamic spectrum allocation engine based on DS theory and potential game. ICNC (2010)
Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis
Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks. J. Comput. Biol. 17 (2) (2010)
Peng Qiu, Sylvia K. Plevritis
Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis. J. Comput. Biol. 16 (7) (2009)
Peng Qiu, Guanglong Wang, Jianglei Lu, Shuang Feng
Modeling of Neuron Based on Single Electron Transistor. CSO (1) (2009)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zsolt Szabo
An Activity-Subspace Approach for Estimating the Integrated Input Function and Relative Distribution Volume in PET Parametric Imaging. IEEE Trans. Inf. Technol. Biomed. 13 (1) (2009)
Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis
Fast calculation of pairwise mutual information for gene regulatory network reconstruction. Comput. Methods Programs Biomed. 94 (2) (2009)
Peng Qiu, K. J. Ray Liu
A robust method for QRS detection based on modified p-spectrum. ICASSP (2008)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu
Dependence network modeling for biomarker identification. Bioinform. 23 (2) (2007)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
Genomic processing for cancer classification and prediction - Abroad review of the recent advances in model-based genomoric and proteomic signal processing for cancer detection. IEEE Signal Process. Mag. 24 (1) (2007)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
Dependence model and network for biomarker identification and cancer classification. EUSIPCO (2006)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
Polynomial model approach for resynchronization analysis of cell-cycle gene expression data. Bioinform. 22 (8) (2006)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
Mixture principal component analysis for distribution volume parametric imaging in brain PET studies. ISBI (2006)
Peng Qiu, Z. Jane Wang, K. J. Ray Liu
Ensemble dependence model for classification and prediction of cancer and normal gene expression data. Bioinform. 21 (14) (2005)
Jichang Cao, Peng Qiu, Bin Zhang, Chun Li
The Research of Storage Management and Address Mapping Mechanism in UCard. CCCT (1) (2004)
Jichang Cao, Bin Zhang, Peng Qiu, Chun Li, Fan Zhang
Research on the Foundation Protocols of UCard. CCCT (1) (2004)