Eberhard O. Voit

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 9

Top Topics

Systems Biology

Stress Response

Top Venues

PLoS Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

BMC Syst. Biol.

Publications

Stephen A. Goss, Robert J. Steininger, Dhruv Narayanan, Daniel V. Olivença, Yutong Sun, Peng Qiu, Jim Amato, Eberhard O. Voit, Walter E. Voit, Eric J. Kildebeck
Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents. CoRR (2023)
Daniel V. Olivença, Jacob D. Davis, Eberhard O. Voit
Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models. Frontiers Bioinform. 2 (2022)
Felipe Dalvi-Garcia, Luís L. Fonseca, Ana Tereza Ribeiro de Vasconcelos, Cecilia Hedin-Pereira, Eberhard O. Voit
A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression. PLoS Comput. Biol. 17 (5) (2021)
Itai Dattner, Harold J. Ship, Eberhard O. Voit
Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems. Complex. 2020 (2020)
Chad M. Glen, Melissa L. Kemp, Eberhard O. Voit
Agent-based modeling of morphogenetic systems: Advantages and challenges. PLoS Comput. Biol. 15 (3) (2019)
Eberhard O. Voit
Perspective: Dimensions of the scientific method. PLoS Comput. Biol. 15 (9) (2019)
Jacob D. Davis, Eberhard O. Voit
Metrics for regulated biochemical pathway systems. Bioinform. 35 (12) (2019)
Zhen Qi, Eberhard O. Voit
Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Mojdeh Faraji, Eberhard O. Voit
Stepwise inference of likely dynamic flux distributions from metabolic time series data. Bioinform. 33 (14) (2017)
Po-Wei Chen, Luís L. Fonseca, Yusuf A. Hannun, Eberhard O. Voit
Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast. PLoS Comput. Biol. 11 (8) (2015)
Eberhard O. Voit, Harald A. Martens, Stig W. Omholt
150 Years of the Mass Action Law. PLoS Comput. Biol. 11 (1) (2015)
Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Eberhard O. Voit, Fumihide Shiraishi, Masami Y. Hirai
A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. BMC Syst. Biol. 8 (S-5) (2014)
Sepideh Dolatshahi, Brani Vidakovic, Eberhard O. Voit
A constrained wavelet smoother for pathway identification tasks in systems biology. Comput. Chem. Eng. 71 (2014)
Fumihide Shiraishi, Erika Yoshida, Eberhard O. Voit
An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (6) (2014)
Weiwei Yin, Eberhard O. Voit
Function and design of the Nox1 system in vascular smooth muscle cells. BMC Syst. Biol. 7 (2013)
Po-Wei Chen, Luís L. Fonseca, Yusuf A. Hannun, Eberhard O. Voit
Coordination of Rapid Sphingolipid Responses to Heat Stress in Yeast. PLoS Comput. Biol. 9 (5) (2013)
I-Chun Chou, Eberhard O. Voit
Estimation of dynamic flux profiles from metabolic time series data. BMC Syst. Biol. 6 (2012)
Yun Lee, Luis Escamilla-Treviño, Richard A. Dixon, Eberhard O. Voit
Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach. PLoS Comput. Biol. 8 (11) (2012)
Jialiang Wu, Brani Vidakovic, Eberhard O. Voit
Constructing stochastic models from deterministic process equations by propensity adjustment. BMC Syst. Biol. 5 (2011)
Yun Lee, Fang Chen, Lina Gallego-Giraldo, Richard A. Dixon, Eberhard O. Voit
L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis. PLoS Comput. Biol. 7 (5) (2011)
Juliet Ndukum, Luís L. Fonseca, Helena Santos, Eberhard O. Voit, Susmita Datta
Statistical Inference Methods for Sparse Biological Time Series Data. BMC Syst. Biol. 5 (2011)
Eberhard O. Voit
The role of systems modeling in drug discovery and predictive health. J. Cheminformatics 2 (S-1) (2010)
Zhen Qi, Gary W. Miller, Eberhard O. Voit
The internal state of medium spiny neurons varies in response to different input signals. BMC Syst. Biol. 4 (2010)
Jialiang Wu, Zhen Qi, Eberhard O. Voit
Impact of Delays and Noise on Dopamine Signal Transduction. Silico Biol. 10 (1-2) (2010)
Chih-Lung Ko, Eberhard O. Voit, Feng-Sheng Wang
Estimating parameters for generalized mass action models with connectivity information. BMC Bioinform. 10 (2009)
Marco Vilela, Susana Vinga, Marco Maia, Eberhard O. Voit, Jonas S. Almeida
Identification of neutral biochemical network models from time series data. BMC Syst. Biol. 3 (2009)
Gautam Goel, I-Chun Chou, Eberhard O. Voit
System estimation from metabolic time-series data. Bioinform. 24 (21) (2008)
Marco Vilela, I-Chun Chou, Susana Vinga, Ana Tereza Ribeiro de Vasconcelos, Eberhard O. Voit, Jonas S. Almeida
Parameter optimization in S-system models. BMC Syst. Biol. 2 (2008)
Marco Vilela, Carlos Cristiano H. Borges, Susana Vinga, Ana Tereza Ribeiro de Vasconcelos, Helena Santos, Eberhard O. Voit, Jonas S. Almeida
Automated smoother for the numerical decoupling of dynamics models. BMC Bioinform. 8 (2007)
Simeone Marino, Eberhard O. Voit
An Automated Procedure for the Extraction of Metabolic Network Information from Time Series Data. J. Bioinform. Comput. Biol. 4 (3) (2006)
Lining Yu, Eberhard O. Voit
Construction of bivariate S-distributions with copulas. Comput. Stat. Data Anal. 51 (3) (2006)
Yian Ann Chen, Cheng-Chung Chou, Xinghua Lu, Elizabeth H. Slate, Konan Peck, Wenying Xu, Eberhard O. Voit, Jonas S. Almeida
A multivariate prediction model for microarray cross-hybridization. BMC Bioinform. 7 (2006)
J. M. Muiño, Eberhard O. Voit, Albert Sorribas
GS-distributions: A new family of distributions for continuous unimodal variables. Comput. Stat. Data Anal. 50 (10) (2006)
Raman Lall, Eberhard O. Voit
Parameter estimation in modulated, unbranched reaction chains within biochemical systems. Comput. Biol. Chem. 29 (5) (2005)
Eberhard O. Voit, Simeone Marino, Raman Lall
Challenges for the identification of biological systems from in vivo time series data. Silico Biol. 5 (2) (2004)
Eberhard O. Voit, Jonas S. Almeida
Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinform. 20 (11) (2004)
C. E. Long, Eberhard O. Voit, Edward P. Gatzke
A mixed integer moving horizon formulation for prioritized objective inferential control of a bioprocess system. ACC (2003)
Fumihide Shiraishi, Eberhard O. Voit
Solution of a two-point boundary value model of immobilized enzyme reactions, using an S-system-based root-finding method. Appl. Math. Comput. 127 (2-3) (2002)
Eberhard O. Voit, Tomas Radivoyevitch
Biochemical systems analysis of genome-wide expression data. Bioinform. 16 (11) (2000)
Benedict F. Voit, Eberhard O. Voit
A 7th-grade science project casts doubt on the standard explanation of the Gaussian plume model for seepage through soil. Environ. Model. Softw. 15 (5) (2000)
Eberhard O. Voit, Néstor V. Torres
Simulation and Steady-State Optimization of Integrated Biochemical Systems: Theory and Application in Biotechnology. EUROSIM (1995)