Eugenio Cinquemani

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 9

Top Topics

Gene Expression

Top Venues

PLoS Comput. Biol.

Publications

Rand Asswad, Eugenio Cinquemani, Jean-Luc Gouzé
Kalman-based approaches for online estimation of bioreactor dynamics from fluorescent reporter measurements. ECC (2024)
Emrys Reginato, Aline Marguet, Eugenio Cinquemani
Inference of Tree-Structured Auto-Regressive Models of Gene Expression Parameters from Generation-Snapshot Data. ECC (2024)
Marco Mauri, Jean-Luc Gouzé, Hidde de Jong, Eugenio Cinquemani
Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs. PLoS Comput. Biol. 16 (4) (2020)
Eugenio Cinquemani, Francis Mairet, I. Yegorov, Hidde de Jong, Jean-Luc Gouzé
Optimal control of bacterial growth for metabolite production: The role of timing and costs of control. ECC (2019)
Aline Marguet, Marc Lavielle, Eugenio Cinquemani
Inheritance and variability of kinetic gene expression parameters in microbial cells: modeling and inference from lineage tree data. Bioinform. 35 (14) (2019)
Eugenio Cinquemani
Stochastic reaction networks with input processes: Analysis and application to gene expression inference. Autom. 101 (2019)
Eugenio Cinquemani, Valérie Laroute, Muriel Cocaign-Bousquet, Hidde de Jong, Delphine Ropers
Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data. Bioinform. 33 (14) (2017)
Artémis Llamosi, Andrés M. González-Vargas, Cristian Versari, Eugenio Cinquemani, Giancarlo Ferrari-Trecate, Pascal Hersen, Grégory Batt
What Population Reveals about Individual Cell Identity: Single-Cell Parameter Estimation of Models of Gene Expression in Yeast. PLoS Comput. Biol. 12 (2) (2016)
Eugenio Cinquemani
On Observability and Reconstruction of Promoter Activity Statistics from Reporter Protein Mean and Variance Profiles. HSB (2016)
Eugenio Cinquemani
Reconstruction of promoter activity statistics from reporter protein population snapshot data. CDC (2015)
Maria Anna Rapsomaniki, Eugenio Cinquemani, Nickolaos-Nikiforos Giakoumakis, Panagiotis Kotsantis, John Lygeros, Zoi Lygerou
Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments. Bioinform. 31 (3) (2015)
Diana Stefan, Corinne Pinel, Stéphane Pinhal, Eugenio Cinquemani, Johannes Geiselmann, Hidde de Jong
Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data. PLoS Comput. Biol. 11 (1) (2015)
Eugenio Cinquemani
Reconstructing Statistics of Promoter Switching from Reporter Protein Population Snapshot Data. HSB (2015)
Lakshmeesh R. M. Maruthi, Ilya Tkachev, Alfonso Carta, Eugenio Cinquemani, Pascal Hersen, Grégory Batt, Alessandro Abate
Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach. CMSB (2014)
Andres M. Gonzalez, Jannis Uhlendorf, Joe Schaul, Eugenio Cinquemani, Grégory Batt, Giancarlo Ferrari-Trecate
Identification of biological models from single-cell data: A comparison between mixed-effects and moment-based inference. ECC (2013)
Alfonso Carta, Eugenio Cinquemani
State estimation for gene networks with intrinsic and extrinsic noise: A case study on E.coli arabinose uptake dynamics. ECC (2013)
Peter Hokayem, Eugenio Cinquemani, Debasish Chatterjee, Federico Ramponi, John Lygeros
Stochastic receding horizon control with output feedback and bounded controls. Autom. 48 (1) (2012)
Eugenio Cinquemani, Mayank Agarwal, Debasish Chatterjee, John Lygeros
Convexity and convex approximations of discrete-time stochastic control problems with constraints. Autom. 47 (9) (2011)
Sara Berthoumieux, Matteo Brilli, Hidde de Jong, Daniel Kahn, Eugenio Cinquemani
Identification of metabolic network models from incomplete high-throughput datasets. Bioinform. 27 (13) (2011)
Riccardo Porreca, Eugenio Cinquemani, John Lygeros, Giancarlo Ferrari-Trecate
Structural identification of unate-like genetic network models from time-lapse protein concentration measurements. CDC (2010)
Peter Hokayem, Eugenio Cinquemani, Debasish Chatterjee, Federico Ramponi, John Lygeros
Stochastic receding horizon control with output feedback and bounded control inputs. CDC (2010)
Riccardo Porreca, Eugenio Cinquemani, John Lygeros, Giancarlo Ferrari-Trecate
Identification of genetic network dynamics with unate structure. Bioinform. 26 (9) (2010)
Mayank Agarwal, Eugenio Cinquemani, Debasish Chatterjee, John Lygeros
On convexity of stochastic optimization problems with constraints. ECC (2009)
Eugenio Cinquemani, Andreas Milias-Argeitis, Sean Summers, John Lygeros
Local Identification of Piecewise Deterministic Models of Genetic Networks. HSCC (2009)
Debasish Chatterjee, Eugenio Cinquemani, Georgios Chaloulos, John Lygeros
On stochastic control up to a hitting time. CDC (2009)
Eugenio Cinquemani, Riccardo Porreca, John Lygeros, Giancarlo Ferrari-Trecate
Canalizing structure of genetic network dynamics: modelling and identification via mixed-integer programming. CDC (2009)
Debasish Chatterjee, Eugenio Cinquemani, John Lygeros
Probabilistic regulation in stochastic hybrid systems subject to safety constraints. ADHS (2009)
Eugenio Cinquemani, Gianluigi Pillonetto
Wavelet estimation by Bayesian thresholding and model selection. Autom. 44 (9) (2008)
Eugenio Cinquemani, Vassilis Roukos, Zoi Lygerou, John Lygeros
Numerical analysis of FRAP experiments for DNA replication and repair. CDC (2008)
Eugenio Cinquemani, Andreas Milias-Argeitis, Sean Summers, John Lygeros
Stochastic dynamics of genetic networks: modelling and parameter identification. Bioinform. 24 (23) (2008)
Eugenio Cinquemani, Riccardo Porreca, Giancarlo Ferrari-Trecate, John Lygeros
Subtilin Production by Bacillus Subtilis: Stochastic Hybrid Models and Parameter Identification. IEEE Trans. Autom. Control. 53 (2008)
Eugenio Cinquemani, Riccardo Porreca, Giancarlo Ferrari-Trecate, John Lygeros
A general framework for the identification of jump Markov linear systems. CDC (2007)
Eugenio Cinquemani, Riccardo Porreca, Giancarlo Ferrari-Trecate, John Lygeros
Parameter identification for stochastic hybrid models of biological interaction networks. CDC (2007)
Eugenio Cinquemani, Mario Micheli
State estimation in stochastic hybrid Systems with sparse observations. IEEE Trans. Autom. Control. 51 (8) (2006)
Eugenio Cinquemani, Giorgio Picci
Identification of wood rings from sparse tomographic data. CDC (2006)
Eugenio Cinquemani
A superposition principle for the Kalman filter. Syst. Control. Lett. 55 (1) (2006)
Eugenio Cinquemani, Mario Micheli, Giorgio Picci
Fault detection in a class of stochastic hybrid systems. CDC (2004)