Eugénio C. Ferreira

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 4

Top Topics

Parameter Settings

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Comput. Electron. Agric.

Expert Syst. Appl.

Publications

Fernando Cruz, João Capela, Eugénio C. Ferreira, Miguel Rocha, Oscar Días
BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (2) (2024)
Clara Sousa, Cristina Quintelas, Catarina Augusto, Eugénio C. Ferreira, Ricardo N. M. J. Páscoa
cultivars and chemometric models: An interlaboratory study. Comput. Electron. Agric. 159 (2019)
Fernando Cruz, Davide Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Oscar Días
SamPler - a novel method for selecting parameters for gene functional annotation routines. BMC Bioinform. 20 (1) (2019)
Oscar Días, Daniel Gomes, Paulo Vilaça, João G. R. Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
Genome-Wide Semi-Automated Annotation of Transporter Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Miguel Rocha, Rui Mendes, Orlando Rocha, Isabel Rocha, Eugénio C. Ferreira
Optimization of fed-batch fermentation processes with bio-inspired algorithms. Expert Syst. Appl. 41 (5) (2014)
Daniela P. Mesquita, Gianluca Selvaggio, Jorge R. Cunha, Cristiano S. Leal, António Luís Amaral, Eugénio C. Ferreira
Image Analysis for Automatic Characterization of Polyhydroxyalcanoates Granules. ICIAR (2013)
Daniel Machado, Zita Soons, Kiran Raosaheb Patil, Eugénio C. Ferreira, Isabel Rocha
Random sampling of elementary flux modes in large-scale metabolic networks. Bioinform. 28 (18) (2012)
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. J. Integr. Bioinform. 8 (3) (2011)
Rafael Carreira, Sónia Carneiro, Rui Pereira, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira, Anália Lourenço
Semantic annotation of biological concepts interplaying microbial cellular responses. BMC Bioinform. 12 (2011)
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
Metabolic Pathways. PACBB (2011)
Anália Lourenço, Sónia Carneiro, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
molecular biology data. Briefings Bioinform. 12 (2) (2011)
Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha
Systems. PACBB (2011)
Rafael S. Costa, Daniel Machado, Isabel Rocha, Eugénio C. Ferreira
Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations. Biosyst. 100 (2) (2010)
Sónia Carneiro, Silas Granato Villas-Bôas, Isabel Rocha, Eugénio C. Ferreira
. IWPACBB (2010)
Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha
OptFlux: an open-source software platform for in silico metabolic engineering. BMC Syst. Biol. 4 (2010)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
Model Transformation of Metabolic Networks using a Petri Net Based Framework. ACSD/Petri Nets Workshops (2010)
Anália Lourenço, Rafael Carreira, Daniel Glez-Peña, José Ramon Méndez, Sónia Carneiro, Luis Mateus Rocha, Fernando Díaz, Eugénio C. Ferreira, Isabel Rocha, Florentino Fdez-Riverola, Miguel Rocha
BioDR: Semantic indexing networks for biomedical document retrieval. Expert Syst. Appl. 37 (4) (2010)
Pedro Evangelista, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha
A Software Tool for the Simulation and Optimization of Dynamic Metabolic Models. IWANN (2) (2009)
Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
@Note: A workbench for Biomedical Text Mining. J. Biomed. Informatics 42 (4) (2009)
Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Rafael Carreira, Luis Mateus Rocha, Daniel Glez-Peña, José Ramon Méndez, Florentino Fdez-Riverola, Fernando Díaz, Isabel Rocha, Miguel Rocha
Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. IWANN (2) (2009)
Rafael S. Costa, Daniel Machado, Isabel Rocha, Eugénio C. Ferreira
Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli . IWANN (2) (2009)
Pedro Evangelista, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha
Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective. EvoBIO (2009)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems. IWANN (2) (2009)
Rui Mendes, Anália Lourenço, Sónia Carneiro, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira
A framework for the integrated analysis of metabolic and regulatory networks. BIBE (2008)
Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
A framework for the development of Biomedical Text Mining software tools. BIBE (2008)
Paulo Maia, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha
Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains. BIBE (2008)
José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. IWPACBB (2008)
Miguel Rocha, Paulo Maia, Rui Mendes, José P. Pinto, Eugénio C. Ferreira, Jens Nielsen, Kiran Raosaheb Patil, Isabel Rocha
Natural computation meta-heuristics for the in silico optimization of microbial strains. BMC Bioinform. 9 (2008)
Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms. CIBCB (2007)
Enrique J. Herrera-López, Bernardino Castillo, Jesús Ramírez, Eugénio C. Ferreira
Takagi-sugeno multiple-model controller for a continuous baking yeast fermentation process. ICINCO-ICSO (2007)
Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes. EvoBIO (2007)
Miguel Rocha, Rui Mendes, Paulo Maia, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains. EPIA Workshops (2007)
Enrique J. Herrera-López, Bernardino Castillo, Jesús Ramírez, Eugénio C. Ferreira
Exact Fuzzy Observer for a Baker's Yeast Fed-Batch Fermentation Process. FUZZ-IEEE (2007)
António Luís Amaral, Manuel Mota, Eugénio C. Ferreira, A. Crispim
Image analysis methodology to study the evolution of chromium penetration in chromium tannage. CompIMAGE (2006)
Rui Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha
A Comparison of Algorithms for the Optimization of Fermentation Processes. IEEE Congress on Evolutionary Computation (2006)
Isabel A. Espírito-Santo, Edite M. G. P. Fernandes, M. Madalena Araújo, Eugénio C. Ferreira
NEOS Server Usage in Wastewater Treatment Cost Minimization. ICCSA (4) (2005)
Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira
A new representation in evolutionary algorithms for the optimization of bioprocesses. Congress on Evolutionary Computation (2005)
Miguel Rocha, José Neves, Isabel Rocha, Eugénio C. Ferreira
Evolutionary Algorithms for Optimal Control in Fed-Batch Fermentation Processes. EvoWorkshops (2004)
Eugénio C. Ferreira, Romualdo Salcedo
Can spreadsheet solvers solve demanding optimization problems? Comput. Appl. Eng. Educ. 9 (1) (2001)