Bruce Tidor

Publication Activity (10 Years)

Years Active: 1993-2013
Publications (10 Years): 0

Top Topics

Computational Models

Top Venues

PLoS Comput. Biol.

Publications

Tina Toni, Bruce Tidor
Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology. PLoS Comput. Biol. 9 (3) (2013)
XiaoNa Wei, Bu-Cong Han, Jing-Xian Zhang, X. H. Liu, C. Y. Tan, Y. Y. Jiang, Boon Chuan Low, Bruce Tidor, Yu Zong Chen
An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability. BMC Syst. Biol. 5 (2011)
Jared E. Toettcher, Anya Castillo, Bruce Tidor, Jacob White
Biochemical oscillator sensitivity analysis in the presence of conservation constraints. DAC (2011)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
Model Transformation of Metabolic Networks using a Petri Net Based Framework. ACSD/Petri Nets Workshops (2010)
A. Katharina Wilkins, Bruce Tidor, Jacob White, Paul I. Barton
Sensitivity Analysis for Oscillating Dynamical Systems. SIAM J. Sci. Comput. 31 (4) (2009)
Eun-Jong Hong, Shaun M. Lippow, Bruce Tidor, Tomás Lozano-Pérez
Rotamer optimization for protein design through MAP estimation and problem-size reduction. J. Comput. Chem. 30 (12) (2009)
Michael D. Altman, Jaydeep P. Bardhan, Jacob K. White, Bruce Tidor
Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements. J. Comput. Chem. 30 (1) (2009)
Bracken M. King, Bruce Tidor
MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets. Bioinform. 25 (9) (2009)
Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, V. Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus
CHARMM: The biomolecular simulation program. J. Comput. Chem. 30 (10) (2009)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems. IWANN (2) (2009)
Joshua F. Apgar, Jared E. Toettcher, Drew Endy, Forest M. White, Bruce Tidor
Stimulus Design for Model Selection and Validation in Cell Signaling. PLoS Comput. Biol. 4 (2) (2008)
Mala L. Radhakrishnan, Bruce Tidor
Optimal Drug Cocktail Design: Methods for Targeting Molecular Ensembles and Insights from Theoretical Model Systems. J. Chem. Inf. Model. 48 (5) (2008)
Shih-Hsien Kuo, Bruce Tidor, Jacob White
A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics. ACM J. Emerg. Technol. Comput. Syst. 4 (2) (2008)
A. Katharina Wilkins, Paul I. Barton, Bruce Tidor
The Per2 Negative Feedback Loop Sets the Period in the Mammalian Circadian Clock Mechanism. PLoS Comput. Biol. 3 (12) (2007)
Jaydeep P. Bardhan, Michael D. Altman, Jacob K. White, Bruce Tidor
Efficient optimization of electrostatic interactions between biomolecules. CDC (2007)
Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White
FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule Simulation. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 25 (2) (2006)
Shihhsien S. Kuo, Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White
Fast methods for simulation of biomolecule electrostatics. ICCAD (2002)
Michael de la Maza, Bruce Tidor
An Analysis of Selection Procedures with Particular Attention Paid to Proportional and Boltzmann Selection. ICGA (1993)