Milan Hodoscek

Publication Activity (10 Years)

Years Active: 1997-2021
Publications (10 Years): 5

Top Topics

Drosophila Melanogaster

Protein Protein

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

J. Comput. Aided Mol. Des.

PLoS Comput. Biol.

Publications

Thomas Giannos, Samo Lesnik, Urban Bren, Milan Hodoscek, Tatiana Domratcheva, Ana-Nicoleta Bondar
CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs. J. Chem. Inf. Model. 61 (8) (2021)
Samo Lesnik, Milan Hodoscek, Barbara Podobnik, Janez Konc
Loop Grafting between Similar Local Environments for Fc-Silent Antibodies. J. Chem. Inf. Model. 60 (11) (2020)
Samo Lesnik, Milan Hodoscek, Urban Bren, Christoph Stein, Ana-Nicoleta Bondar
Potential Energy Function for Fentanyl-Based Opioid Pain Killers. J. Chem. Inf. Model. 60 (7) (2020)
Matej Janezic, Vlado Dimovski, Milan Hodoscek
Modeling a learning organization using a molecular network framework. Comput. Educ. 118 (2018)
Mitja Ogrizek, Samo Turk, Samo Lesnik, Izidor Sosic, Milan Hodoscek, Bojana Mirkovic, Janko Kos, Dusanka Janezic, Stanislav Gobec, Janez Konc
Molecular dynamics to enhance structure-based virtual screening on cathepsin B. J. Comput. Aided Mol. Des. 29 (8) (2015)
Urska Zelenko, Milan Hodoscek, Damjana Rozman, Simona Golic Grdadolnik
Structural Insight into the Unique Binding Properties of Pyridylethanol(phenylethyl)amine Inhibitor in Human CYP51. J. Chem. Inf. Model. 54 (12) (2014)
Janez Konc, Milan Hodoscek, Mitja Ogrizek, Joanna Trykowska Konc, Dusanka Janezic
Structure-Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison. PLoS Comput. Biol. 9 (11) (2013)
Achani K. Yatawara, Milan Hodoscek, Dale F. Mierke
Ligand Binding Site Identification by Higher Dimension Molecular Dynamics. J. Chem. Inf. Model. 53 (3) (2013)
Nejc Carl, Milan Hodoscek, Blaz Vehar, Janez Konc, Bernard R. Brooks, Dusanka Janezic
Correlating Protein Hot Spot Surface Analysis Using ProBiS with Simulated Free Energies of Protein-Protein Interfacial Residues. J. Chem. Inf. Model. 52 (10) (2012)
Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, V. Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus
CHARMM: The biomolecular simulation program. J. Comput. Chem. 30 (10) (2009)
Jernej Zidar, Elizabeta T. Pirc, Milan Hodoscek, Peter Bukovec
Copper(II) Ion Binding to Cellular Prion Protein. J. Chem. Inf. Model. 48 (2) (2008)
Benjamin T. Miller, Rishi P. Singh, Jeffery B. Klauda, Milan Hodoscek, Bernard R. Brooks, H. Lee Woodcock III
CHARMMing: A New, Flexible Web Portal for CHARMM. J. Chem. Inf. Model. 48 (9) (2008)
Matej Praprotnik, Stanko Hocevar, Milan Hodoscek, Matej Penca, Dusanka Janezic
-34 molecular sieve. J. Comput. Chem. 29 (1) (2008)
H. Lee Woodcock III, Milan Hodoscek, Andrew T. B. Gilbert, Peter M. W. Gill, Henry F. Schaefer III, Bernard R. Brooks
Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations. J. Comput. Chem. 28 (9) (2007)
Franci Merzel, Milan Hodoscek, Dusanka Janezic, Alain Sanson
New force field for calcium binding sites in annexin-membrane complexes. J. Comput. Chem. 27 (4) (2006)
Sasa Kovacic, Antonija Lesar, Milan Hodoscek
Reaction. J. Chem. Inf. Model. 45 (1) (2005)
Urban Bren, Milan Hodoscek, Joze Koller
Development and Validation of Empirical Force Field Parameters for Netropsin. J. Chem. Inf. Model. 45 (6) (2005)
Urban Borstnik, Milan Hodoscek, Dusanka Janezic
Improving the Performance of Molecular Dynamics Simulations on Parallel Clusters. J. Chem. Inf. Model. 44 (2) (2004)
Antonija Lesar, Milan Hodoscek
Transition State Structure and Energetics of the N2O + X (X = Cl, Br) Reactions. J. Chem. Inf. Comput. Sci. 42 (3) (2002)
Antonija Lesar, Saa Prebil, Milan Hodoscek
Enthalpy of the Gas-Phase CO2 + Mg Reaction from ab Initio Total Energies. J. Chem. Inf. Comput. Sci. 42 (4) (2002)
Gregor Mlinsek, Marjana Novic, Milan Hodoscek, Tomaz Solmajer
Prediction of Enzyme Binding: Human Thrombin Inhibition Study by Quantum Chemical and Artificial Intelligence Methods Based on X-ray Structures. J. Chem. Inf. Comput. Sci. 41 (5) (2001)
Marc C. Nicklaus, Robert W. Williams, Bruno Bienfait, Eric S. Billings, Milan Hodoscek
Computational Chemistry on Commodity-Type Computers. J. Chem. Inf. Comput. Sci. 38 (5) (1998)
Darko Zupanic, Milan Hodoscek, Nada Lavrac, Igor Mozetic
Global Energy Minimization of Small Molecules Combining Constraint Logic Programming and Molecular Mechanics. J. Chem. Inf. Comput. Sci. 37 (6) (1997)