Lennart Nilsson

Publication Activity (10 Years)

Years Active: 1999-2018
Publications (10 Years): 3

Top Topics

Generalized Belief Propagation

Active Contour Model

Graphical Models

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Yossa Dwi Hartono, You Xu, Andrey Karshikoff, Lennart Nilsson, Alessandra Villa
Modeling pK Shift in DNA Triplexes Containing Locked Nucleic Acids. J. Chem. Inf. Model. 58 (4) (2018)
You Xu, Alessandra Villa, Lennart Nilsson
The free energy of locking a ring: Changing a deoxyribonucleoside to a locked nucleic acid. J. Comput. Chem. 38 (15) (2017)
You Xu, Kenno Vanommeslaeghe, Alexey Aleksandrov, Alexander D. MacKerell Jr., Lennart Nilsson
Additive CHARMM force field for naturally occurring modified ribonucleotides. J. Comput. Chem. 37 (10) (2016)
Indrajit Deb, Joanna Sarzynska, Lennart Nilsson, Ansuman Lahiri
Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields. J. Chem. Inf. Model. 54 (4) (2014)
Elizabeth J. Denning, U. Deva Priyakumar, Lennart Nilsson, Alexander D. MacKerell Jr.
Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA. J. Comput. Chem. 32 (9) (2011)
Lennart Nilsson
Efficient table lookup without inverse square roots for calculation of pair wise atomic interactions in classical simulations. J. Comput. Chem. 30 (9) (2009)
Goedele Roos, Nicolas Foloppe, Koen Van Laer, Lode Wyns, Lennart Nilsson, Paul Geerlings, Joris Messens
How Thioredoxin Dissociates Its Mixed Disulfide. PLoS Comput. Biol. 5 (8) (2009)
Bernard R. Brooks, Charles L. Brooks III, Alexander D. MacKerell Jr., Lennart Nilsson, Robert J. Petrella, Benoît Roux, Y. Won, G. Archontis, Christian Bartels, Stefan Boresch, Amedeo Caflisch, Leo S. D. Caves, Qiang Cui, Aaron R. Dinner, Michael Feig, S. Fischer, Jiali Gao, Milan Hodoscek, Wonpil Im, Krzysztof Kuczera, Themis Lazaridis, J. Ma, V. Ovchinnikov, Emanuele Paci, Richard W. Pastor, C. B. Post, J. Z. Pu, Michael Schaefer, Bruce Tidor, Richard M. Venable, H. Lee Woodcock III, X. Wu, W. Yang, Darrin M. York, Martin Karplus
CHARMM: The biomolecular simulation program. J. Comput. Chem. 30 (10) (2009)
Yaoquan Tu, Lennart Nilsson, Aatto Laaksonen
Tight-Binding-Like Approximate Density-Functional Quantum Mechanical Method. PARA (2006)
Peter Carlsson, Lennart Nilsson
Improved precision and efficiency of free energy calculations for small systems using lambda-scaled atomic masses and separating conformational and transformational sampling. J. Comput. Chem. 24 (12) (2003)
Pekka Mark, Lennart Nilsson
Structure and dynamics of liquid water with different long-range interaction truncation and temperature control methods in molecular dynamics simulations. J. Comput. Chem. 23 (13) (2002)
Srikanta Sen, Lennart Nilsson
Some practical aspects of free energy calculations from molecular dynamics simulation. J. Comput. Chem. 20 (8) (1999)