Alessandra Villa

Publication Activity (10 Years)

Years Active: 2002-2018
Publications (10 Years): 3

Top Topics

Sequence Analysis

Generalized Belief Propagation

Competitive Learning

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

PLoS Comput. Biol.

Publications

Yossa Dwi Hartono, You Xu, Andrey Karshikoff, Lennart Nilsson, Alessandra Villa
Modeling pK Shift in DNA Triplexes Containing Locked Nucleic Acids. J. Chem. Inf. Model. 58 (4) (2018)
You Xu, Alessandra Villa, Lennart Nilsson
The free energy of locking a ring: Changing a deoxyribonucleoside to a locked nucleic acid. J. Comput. Chem. 38 (15) (2017)
Viveca Lindahl, Alessandra Villa, Berk Hess
Sequence dependency of canonical base pair opening in the DNA double helix. PLoS Comput. Biol. 13 (4) (2017)
Serena Donnini, Alan E. Mark, André H. Juffer, Alessandra Villa
Incorporating the effect of ionic strength in free energy calculations using explicit ions. J. Comput. Chem. 26 (2) (2005)
Chris Oostenbrink, Alessandra Villa, Alan E. Mark, Wilfred F. van Gunsteren
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6. J. Comput. Chem. 25 (13) (2004)
Alessandra Villa, Ronen Zangi, Gilles Pieffet, Alan E. Mark
Sampling and convergence in free energy calculations of protein-ligand interactions: The binding of triphenoxypyridine derivatives to factor Xa and trypsin. J. Comput. Aided Mol. Des. 17 (10) (2003)
Alessandra Villa, Alan E. Mark
Calculation of the free energy of solvation for neutral analogs of amino acid side chains. J. Comput. Chem. 23 (5) (2002)