Calculation of the free energy of solvation for neutral analogs of amino acid side chains.
Alessandra VillaAlan E. MarkPublished in: J. Comput. Chem. (2002)
Keyphrases
- free energy
- amino acids
- protein sequences
- belief propagation
- upper bound
- fixed point
- secondary structure
- protein function
- protein structure
- posterior distribution
- protein folding
- competitive learning
- amino acid sequences
- physico chemical
- approximate inference
- protein structure prediction
- graphical models
- physicochemical properties
- energy minimization
- latent variables
- graph cuts
- protein families
- dynamic programming
- model selection