Joanna Sarzynska

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 7

Top Topics

Molecular Dynamics

Arabidopsis Thaliana

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

J. Comput. Chem.

Publications

Nivedita Dutta, Indrajit Deb, Joanna Sarzynska, Ansuman Lahiri
Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives. J. Comput. Aided Mol. Des. 36 (3) (2022)
Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. 50 (W1) (2022)
Joanna Miskiewicz, Joanna Sarzynska, Marta Szachniuk
How bioinformatics resources work with G4 RNAs. Briefings Bioinform. 22 (3) (2021)
Mariusz Popenda, Joanna Miskiewicz, Joanna Sarzynska, Tomasz Zok, Marta Szachniuk
Topology-based classification of tetrads and quadruplex structures. Bioinform. 36 (4) (2020)
Nivedita Dutta, Joanna Sarzynska, Ansuman Lahiri
Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space. J. Chem. Inf. Model. 60 (10) (2020)
Agnieszka Mickiewicz, Joanna Sarzynska, Maciej Milostan, Anna Kurzynska-Kokorniak, Agnieszka Rybarczyk, Piotr Lukasiak, Tadeusz Kulinski, Marek Figlerowicz, Jacek Blazewicz
Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA. Comput. Biol. Chem. 66 (2017)
Indrajit Deb, Rupak Pal, Joanna Sarzynska, Ansuman Lahiri
Parameters Improve the Conformational Characteristics of Modified Uridines. J. Comput. Chem. 37 (17) (2016)
Indrajit Deb, Joanna Sarzynska, Lennart Nilsson, Ansuman Lahiri
Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields. J. Chem. Inf. Model. 54 (4) (2014)