Maciej Antczak

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 17

Top Topics

Service Architecture

Structural Model

Solving Optimization Problems

Secondary Structure

Top Venues

Nucleic Acids Res.

Publications

Michal Zurkowski, Maciej Antczak, Marta Szachniuk
High-quality, customizable heuristics for RNA 3D structure alignment. Bioinform. 39 (5) (2023)
Marek Justyna, Maciej Antczak, Marta Szachniuk
Machine learning for RNA 2D structure prediction benchmarked on experimental data. Briefings Bioinform. 24 (3) (2023)
Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak
RNAloops: a database of RNA multiloops. Bioinform. 38 (17) (2022)
Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk
RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinform. 38 (14) (2022)
Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. 50 (W1) (2022)
Jan Badura, Artur Laskowski, Maciej Antczak, Jacek Blazewicz, Grzegorz Pawlak, Erwin Pesch, Thomas Villmann, Szymon Wasik
Brilliant Challenges Optimization Problem Submission Contest Final Report. CoRR (2021)
Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak
New models and algorithms for RNA pseudoknot order assignment. Int. J. Appl. Math. Comput. Sci. 30 (2) (2020)
Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs. Bioinform. 35 (1) (2019)
Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski
Evaluation as a Service architecture and crowdsourced problems solving implemented in Optil.io platform. CoRR (2018)
Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. 34 (8) (2018)
Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk
RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinform. 19 (1) (2018)
Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal
A Survey on Online Judge Systems and Their Applications. ACM Comput. Surv. 51 (1) (2018)
Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal
A Survey on Online Judge Systems and Their Applications. CoRR (2017)
Maciej Antczak, Marta Kasprzak, Piotr Lukasiak, Jacek Blazewicz
Structural alignment of protein descriptors - a combinatorial model. BMC Bioinform. 17 (2016)
Marek Chlopkowski, Maciej Antczak, Michal Slusarczyk, Aleksander Wdowinski, Michal Zajaczkowski, Marta Kasprzak
High-order statistical compressor for long-term storage of DNA sequencing data. RAIRO Oper. Res. 50 (2) (2016)
Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal
Optil.io: Cloud Based Platform For Solving Optimization Problems Using Crowdsourcing Approach. CSCW Companion (2016)
Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Jacek Blazewicz
SphereGrinder - reference structure-based tool for quality assessment of protein structural models. BIBM (2015)
Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. 16 (2015)
Tomasz Zok, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz, Marta Szachniuk
Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach. Int. J. Appl. Math. Comput. Sci. 25 (3) (2015)
Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz
RNAssess - a web server for quality assessment of RNA 3D structures. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Res. 42 (Webserver-Issue) (2014)