Agnieszka Rybarczyk

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 8

Top Topics

Cardiovascular Disease

Secondary Structure

Stochastic Context Free Grammars

Top Venues

Fundam. Informaticae

Publications

Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz
RNA World Modeling: A Comparison of Two Complementary Approaches. Entropy 24 (4) (2022)
Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs. Bioinform. 35 (1) (2019)
Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk, Piotr Formanowicz
The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach. Biosyst. 165 (2018)
Dorota Formanowicz, Agnieszka Rybarczyk, Piotr Formanowicz
Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets. Fundam. Informaticae 160 (1-2) (2018)
Agnieszka Mickiewicz, Joanna Sarzynska, Maciej Milostan, Anna Kurzynska-Kokorniak, Agnieszka Rybarczyk, Piotr Lukasiak, Tadeusz Kulinski, Marek Figlerowicz, Jacek Blazewicz
Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA. Comput. Biol. Chem. 66 (2017)
Marcin Radom, Agnieszka Rybarczyk, Bartlomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz
Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems. Bioinform. 33 (23) (2017)
Agnieszka Rybarczyk, Alain Hertz, Marta Kasprzak, Jacek Blazewicz
Tabu Search for the RNA Partial Degradation Problem. Int. J. Appl. Math. Comput. Sci. 27 (2) (2017)
Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. 16 (2015)
Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz
Poseidon: An information retrieval and extraction system for metagenomic marine science. Ecol. Informatics 12 (2012)
Jacek Blazewicz, Marek Figlerowicz, Marta Kasprzak, Martyna Nowacka, Agnieszka Rybarczyk
RNA Partial Degradation Problem: Motivation, Complexity, Algorithm. J. Comput. Biol. 18 (6) (2011)