Mariusz Popenda

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 9

Top Topics

Automated Classification

Quality Assessment

Top Venues

Nucleic Acids Res.

Central Eur. J. Oper. Res.

Publications

Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. 50 (W1) (2022)
Mariusz Popenda, Joanna Miskiewicz, Joanna Sarzynska, Tomasz Zok, Marta Szachniuk
Topology-based classification of tetrads and quadruplex structures. Bioinform. 36 (4) (2020)
Tomasz Zok, Mariusz Popenda, Marta Szachniuk
ElTetrado: a tool for identification and classification of tetrads and quadruplexes. BMC Bioinform. 21 (1) (2020)
Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak
New models and algorithms for RNA pseudoknot order assignment. Int. J. Appl. Math. Comput. Sci. 30 (2) (2020)
Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. 34 (8) (2018)
Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk
RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinform. 19 (1) (2018)
Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. 16 (2015)
Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz
RNAssess - a web server for quality assessment of RNA 3D structures. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk
RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Tomasz Zok, Mariusz Popenda, Marta Szachniuk
MCQ4Structures to compute similarity of molecule structures. Central Eur. J. Oper. Res. 22 (3) (2014)
Mariusz Popenda, Marta Szachniuk, Marek Blazewicz, Szymon Wasik, Edmund K. Burke, Jacek Blazewicz, Ryszard W. Adamiak
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. BMC Bioinform. 11 (2010)
Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz
An assignment walk through 3D NMR spectrum. CIBCB (2009)
Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures. Nucleic Acids Res. 36 (Database-Issue) (2008)
Ryszard W. Adamiak, Jacek Blazewicz, Piotr Formanowicz, Zofia Gdaniec, Marta Kasprzak, Mariusz Popenda, Marta Szachniuk
An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes. J. Comput. Biol. 11 (1) (2004)