Urban Bren

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 9

Top Topics

Protein Structure

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

J. Cheminformatics

Publications

Matic Broz, Chris Oostenbrink, Urban Bren
The Effect of Microwaves on Protein Structure: Molecular Dynamics Approach. J. Chem. Inf. Model. 64 (6) (2024)
Vid Ravnik, Marko Jukic, Urban Bren
Identifying Metal Binding Sites in Proteins Using Homologous Structures, the MADE Approach. J. Chem. Inf. Model. 63 (16) (2023)
Samo Lesnik, Urban Bren, Tatiana Domratcheva, Ana-Nicoleta Bondar
Fentanyl and the Fluorinated Fentanyl Derivative NFEPP Elicit Distinct Hydrogen-Bond Dynamics of the Opioid Receptor. J. Chem. Inf. Model. 63 (15) (2023)
Jelena Tosovic, Domagoj Fijan, Marko Jukic, Urban Bren
Conserved Water Networks Identification for Drug Design Using Density Clustering Approaches on Positional and Orientational Data. J. Chem. Inf. Model. 62 (23) (2022)
Marko Jukic, Sebastjan Kralj, Natalia Nikitina, Urban Bren
Bioinformatic and MD Analysis of N501Y SARS-CoV-2 (UK) Variant. ANTICOVID (2021)
Thomas Giannos, Samo Lesnik, Urban Bren, Milan Hodoscek, Tatiana Domratcheva, Ana-Nicoleta Bondar
CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs. J. Chem. Inf. Model. 61 (8) (2021)
Samo Lesnik, Milan Hodoscek, Urban Bren, Christoph Stein, Ana-Nicoleta Bondar
Potential Energy Function for Fentanyl-Based Opioid Pain Killers. J. Chem. Inf. Model. 60 (7) (2020)
Katarina Kores, Samo Lesnik, Urban Bren, Dusanka Janezic, Janez Konc
Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking. J. Chem. Inf. Model. 59 (5) (2019)
Samo Lesnik, Blaz Skrlj, Nika Erzen, Urban Bren, Stanislav Gobec, Janez Konc, Dusanka Janezic
BoBER: web interface to the base of bioisosterically exchangeable replacements. J. Cheminformatics 9 (1) (2017)
Tibor Kuna, Urban Bren
Carcinogenesis induced by Aflatoxin B1: A computational study. BIBE (2015)
Michael M. H. Graf, Zhixiong Lin, Urban Bren, Dietmar Haltrich, Wilfred F. van Gunsteren, Chris Oostenbrink
Pyranose Dehydrogenase Ligand Promiscuity: A Generalized Approach to Simulate Monosaccharide Solvation, Binding, and Product Formation. PLoS Comput. Biol. 10 (12) (2014)
Michael M. H. Graf, Urban Bren, Dietmar Haltrich, Chris Oostenbrink
Molecular dynamics simulations give insight into d-glucose dioxidation at C2 and C3 by Agaricus meleagris pyranose dehydrogenase. J. Comput. Aided Mol. Des. 27 (4) (2013)
Urban Bren, Chris Oostenbrink
Cytochrome P450 3A4 Inhibition by Ketoconazole: Tackling the Problem of Ligand Cooperativity Using Molecular Dynamics Simulations and Free-Energy Calculations. J. Chem. Inf. Model. 52 (6) (2012)
Thanyarat Udommaneethanakit, Thanyada Rungrotmongkol, Urban Bren, Vladimir Frecer, Stanislav Miertus
Dynamic Behavior of Avian Influenza A Virus Neuraminidase Subtype H5N1 in Complex with Oseltamivir, Zanamivir, Peramivir, and Their Phosphonate Analogues. J. Chem. Inf. Model. 49 (10) (2009)
Urban Bren, Milan Hodoscek, Joze Koller
Development and Validation of Empirical Force Field Parameters for Netropsin. J. Chem. Inf. Model. 45 (6) (2005)