Daniel Machado

Publication Activity (10 Years)

Years Active: 2009-2016
Publications (10 Years): 2

Top Topics

Health Care Professionals

Biologically Relevant

Systematic Evaluation

Top Venues

PLoS Comput. Biol.

Publications

Matthew K. Hong, Lauren Wilcox, Daniel Machado, Thomas A. Olson, Stephen F. Simoneaux
Care Partnerships: Toward Technology to Support Teens' Participation in Their Health Care. CHI (2016)
Daniel Machado, Markus J. Herrgård, Isabel Rocha
Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction. PLoS Comput. Biol. 12 (10) (2016)
Daniel Machado, Markus J. Herrgård
Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism. PLoS Comput. Biol. 10 (4) (2014)
Daniel Machado, Lígia R. Rodrigues, Isabel Rocha
A kinetic model for curcumin production in Escherichia coli. Biosyst. 125 (2014)
Rafael S. Costa, Daniel Machado, A. R. Neves, Susana Vinga
Multi-level Dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation. BIOINFORMATICS (2012)
Daniel Machado, Zita Soons, Kiran Raosaheb Patil, Eugénio C. Ferreira, Isabel Rocha
Random sampling of elementary flux modes in large-scale metabolic networks. Bioinform. 28 (18) (2012)
Rafael S. Costa, Daniel Machado, Isabel Rocha, Eugénio C. Ferreira
Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations. Biosyst. 100 (2) (2010)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
Model Transformation of Metabolic Networks using a Petri Net Based Framework. ACSD/Petri Nets Workshops (2010)
Rafael S. Costa, Daniel Machado, Isabel Rocha, Eugénio C. Ferreira
Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli . IWANN (2) (2009)
Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira
A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems. IWANN (2) (2009)