Kiran Raosaheb Patil

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 3

Top Topics

Gene Expression

Machine Learning Models

Single Nucleotide Polymorphisms

Top Venues

PLoS Comput. Biol.

Publications

Vinita Periwal, Stefan Bassler, Sergej Andrejev, Natalia Gabrielli, Kaustubh Raosaheb Patil, Athanasios Typas, Kiran Raosaheb Patil
Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs. PLoS Comput. Biol. 18 (4) (2022)
Joana C. Xavier, Kiran Raosaheb Patil, Isabel Rocha
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes. PLoS Comput. Biol. 14 (11) (2018)
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori, Kiran Raosaheb Patil, Peer Bork, Athanasios Typas
Extensive impact of non-antibiotic drugs on human gut bacteria. Nat. 555 (7698) (2018)
Aleksej Zelezniak, Steven Sheridan, Kiran Raosaheb Patil
Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes. PLoS Comput. Biol. 10 (4) (2014)
Ana Rita Brochado, Sergej Andrejev, Costas D. Maranas, Kiran Raosaheb Patil
Impact of Stoichiometry Representation on Simulation of Genotype-Phenotype Relationships in Metabolic Networks. PLoS Comput. Biol. 8 (11) (2012)
Daniel Machado, Zita Soons, Kiran Raosaheb Patil, Eugénio C. Ferreira, Isabel Rocha
Random sampling of elementary flux modes in large-scale metabolic networks. Bioinform. 28 (18) (2012)
Lars Rønn Olsen, Niels Bjørn Hansen, Mads Tvillinggaard Bonde, Hans Jasper Genee, Dorte Koefoed Holm, Simon Carlsen, Bjarne Gram Hansen, Kiran Raosaheb Patil, Uffe Hasbro Mortensen, Rasmus Wernersson
PHUSER (Primer Help for USER): a novel tool for USER fusion primer design. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Aleksej Zelezniak, Tune H. Pers, Simão Soares, Mary Elizabeth Patti, Kiran Raosaheb Patil
Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes. PLoS Comput. Biol. 6 (4) (2010)
Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha
OptFlux: an open-source software platform for in silico metabolic engineering. BMC Syst. Biol. 4 (2010)
Marija Cvijovic, Roberto Olivares-Hernández, Rasmus Agren, Niklas Dahr, Wanwipa Vongsangnak, Intawat Nookaew, Kiran Raosaheb Patil, Jens Nielsen
BioMet Toolbox: genome-wide analysis of metabolism. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Arnau Montagud, Emilio Navarro, Pedro Fernández de Córdoba, Javier F. Urchueguía, Kiran Raosaheb Patil
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium. BMC Syst. Biol. 4 (2010)
Donatella Cimini, Kiran Raosaheb Patil, Chiara Schiraldi, Jens Nielsen
Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3. BMC Syst. Biol. 3 (2009)
Miguel Rocha, Paulo Maia, Rui Mendes, José P. Pinto, Eugénio C. Ferreira, Jens Nielsen, Kiran Raosaheb Patil, Isabel Rocha
Natural computation meta-heuristics for the in silico optimization of microbial strains. BMC Bioinform. 9 (2008)
Ana Oliveira, Kiran Raosaheb Patil, Jens Nielsen
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks. BMC Syst. Biol. 2 (2008)
Kiran Raosaheb Patil, Isabel Rocha, Jochen Förster, Jens Nielsen
metabolic engineering. BMC Bioinform. 6 (2005)