José P. Pinto

Publication Activity (10 Years)

Years Active: 2007-2020
Publications (10 Years): 4

Top Topics

Dirichlet Process

Top Venues

Nucleic Acids Res.

Publications

Paula Viana, Pedro Carvalho, Maria Teresa Andrade, Pieter P. Jonker, Vasileios Papanikolaou, Inês N. Teixeira, Luís Vilaça, José P. Pinto, Tiago S. Costa
Semantic Storytelling Automation: A Context-Aware and Metadata-Driven Approach. ACM Multimedia (2020)
Tiehang Duan, José P. Pinto, Xiaohui Xie
Parallel clustering of single cell transcriptomic data with split-merge sampling on Dirichlet process mixtures. Bioinform. 35 (6) (2019)
Tiehang Duan, José P. Pinto, Xiaohui Xie
Parallel Clustering of Single Cell Transcriptomic Data with Split-Merge Sampling on Dirichlet Process Mixtures. CoRR (2018)
José P. Pinto, Rui S. R. Machado, Ramiro Magno, Daniel V. Oliveira, Susana Machado, Raquel P. Andrade, José Bragança, Isabel Duarte, Matthias E. Futschik
StemMapper: a curated gene expression database for stem cell lineage analysis. Nucleic Acids Res. 46 (Database-Issue) (2018)
José P. Pinto, Ravi Kiran Reddy Kalathur, Daniel V. Oliveira, Tânia Barata, Rui S. R. Machado, Susana Machado, Ivette Pacheco-Leyva, Isabel Duarte, Matthias E. Futschik
StemChecker: a web-based tool to discover and explore stemness signatures in gene sets. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
José P. Pinto, Ravi Kiran Reddy Kalathur, Rui S. R. Machado, Joana M. Xavier, José Bragança, Matthias E. Futschik
StemCellNet: an interactive platform for network-oriented investigations in stem cell biology. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. J. Integr. Bioinform. 8 (3) (2011)
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
Metabolic Pathways. PACBB (2011)
José P. Pinto, Isabel Rocha, Miguel Rocha
A software tool for network topology analysis under a metabolic engineering perspective. BCB (2010)
Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha
OptFlux: an open-source software platform for in silico metabolic engineering. BMC Syst. Biol. 4 (2010)
José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. IWPACBB (2008)
Miguel Rocha, Paulo Maia, Rui Mendes, José P. Pinto, Eugénio C. Ferreira, Jens Nielsen, Kiran Raosaheb Patil, Isabel Rocha
Natural computation meta-heuristics for the in silico optimization of microbial strains. BMC Bioinform. 9 (2008)
Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms. CIBCB (2007)
Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes. EvoBIO (2007)
Miguel Rocha, Rui Mendes, Paulo Maia, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains. EPIA Workshops (2007)