Paulo Vilaça

Publication Activity (10 Years)

Years Active: 2010-2018
Publications (10 Years): 5

Top Topics

Computationally Intensive

Parameter Estimates

Visualization Tool

Observational Data

Top Venues

BMC Syst. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Cláudia M. Bauer, Paulo Vilaça, Fernanda Ramlov, Eva Regina de Oliveira, Débora Cabral Nazário, Caroline Schmitz, Rafaela Gordo Corrêa, Miguel Rocha, Marcelo Maraschin
In Silico Predictions for Fucoxanthin Production by the Diatom Phaeodactylum Tricornutum. PACBB (2018)
Bruno Pereira, Joana Miguel, Paulo Vilaça, Simão Soares, Isabel Rocha, Sónia Carneiro
Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z. BMC Syst. Biol. 12 (1) (2018)
Nuno Osório, Paulo Vilaça, Miguel Rocha
A Critical Evaluation of Automatic Atom Mapping Algorithms and Tools. PACBB (2017)
Oscar Días, Daniel Gomes, Paulo Vilaça, João G. R. Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
Genome-Wide Semi-Automated Annotation of Transporter Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Filipe Liu, Paulo Vilaça, Isabel Rocha, Miguel Rocha
Development and application of efficient pathway enumeration algorithms for metabolic engineering applications. Comput. Methods Programs Biomed. 118 (2) (2015)
Rafael Carreira, Pedro Evangelista, Paulo Maia, Paulo Vilaça, Marcellinus Pont, Jean-François Tomb, Isabel Rocha, Miguel Rocha
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data. BMC Syst. Biol. 8 (2014)
Orlando Rocha, Paulo Vilaça, Miguel Rocha, Rui Mendes
Reg4OptFlux: an OptFlux plug-in that comprises meta-heuristics approaches for Metabolic engineering using integrated models. NaBIC (2014)
Filipe Liu, Paulo Vilaça, Isabel Rocha, Miguel Rocha
Evaluating Pathway Enumeration Algorithms in Metabolic Engineering Case Studies. PACBB (2014)
Alberto Noronha, Paulo Vilaça, Miguel Rocha
An integrated network visualization framework towards metabolic engineering applications. BMC Bioinform. 15 (2014)
Alberto Noronha, Paulo Vilaça, Miguel Rocha
Network Visualization Tools to Enhance Metabolic Engineering Platforms. PACBB (2013)
Paulo Maia, Paulo Vilaça, Isabel Rocha, Marcellinus Pont, Jean-François Tomb, Miguel Rocha
An integrated computational environment for elementary modes analysis of biochemical networks. Int. J. Data Min. Bioinform. 6 (4) (2012)
João G. R. Cardoso, Paulo Vilaça, Simão Soares, Miguel Rocha
An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction. PRIB (2012)
Paulo Vilaça, Paulo Maia, Miguel Rocha
A Study on the Robustness of Strain Optimization Algorithms. PACBB (2011)
Paulo Vilaça, Isabel Rocha, Miguel Rocha
A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information. Biosyst. 103 (3) (2011)
Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha
OptFlux: an open-source software platform for in silico metabolic engineering. BMC Syst. Biol. 4 (2010)
Paulo Vilaça, Paulo Maia, Isabel Rocha, Miguel Rocha
Metaheuristics for Strain Optimization Using Transcriptional Information Enriched Metabolic Models. EvoBIO (2010)