Oscar Días

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 14

Top Topics

Learning Models

Saccharomyces Cerevisiae

Gene Expression

Escherichia Coli

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

PLoS Comput. Biol.

Publications

Fernando Cruz, João Capela, Eugénio C. Ferreira, Miguel Rocha, Oscar Días
BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (2) (2024)
Emanuel Cunha, Davide Lagoa, José P. Faria, Filipe Liu, Christopher S. Henry, Oscar Días
, an innovative framework for identifying transport systems. Bioinform. 39 (8) (2023)
Emanuel Cunha, Miguel Silva, Inês Chaves, Hüseyin Demirci, Davide Lagoa, Diogo Lima, Miguel Rocha, Isabel Rocha, Oscar Días
The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber. PLoS Comput. Biol. 19 (9) (2023)
Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Cláudia Sampaio, Oscar Días
Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. J. Integr. Bioinform. 19 (3) (2022)
Alexandre Oliveira, Emanuel Cunha, Miguel Silva, Cristiana Faria, Oscar Días
Exploring Xylella fastidiosa's Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium. PACBB (2022)
Alexandre Oliveira, Joana Rodrigues, Eugénio Campos Ferreira, Lígia Rodrigues, Oscar Días
A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli. PLoS Comput. Biol. 17 (3) (2021)
Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Sequeira, Marta Sampaio, Oscar Días
Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. PACBB (2021)
Diogo Lima, Fernando Cruz, Miguel Rocha, Oscar Días
Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis. PACBB (2020)
Emanuel Cunha, Ahmad A. Zeidan, Oscar Días
Towards the Reconstruction of the Genome-Scale Metabolic Model of Lactobacillus acidophilus La-14. PACBB (2020)
Fernando Cruz, Diogo Lima, José P. Faria, Miguel Rocha, Oscar Días
Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression. PACBB (2019)
Marta Sampaio, Miguel Rocha, Hugo Oliveira, Oscar Días
Predicting promoters in phage genomes using PhagePromoter. Bioinform. 35 (24) (2019)
Marta Sampaio, Miguel Rocha, Hugo Oliveira, Oscar Días
Predicting Promoters in Phage Genomes Using Machine Learning Models. PACBB (2019)
Fernando Cruz, Davide Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Oscar Días
SamPler - a novel method for selecting parameters for gene functional annotation routines. BMC Bioinform. 20 (1) (2019)
Oscar Días, Daniel Gomes, Paulo Vilaça, João G. R. Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
Genome-Wide Semi-Automated Annotation of Transporter Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Pedro Barbosa, Oscar Días, Joel P. Arrais, Miguel Rocha
Metagenomic Analysis of the Saliva Microbiome with Merlin. PACBB (2014)
José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. IWPACBB (2008)