Miguel Rocha

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 16

Top Topics

Systematic Evaluation

Top Venues

PLoS Comput. Biol.

Comput. Biol. Medicine

Publications

Tânia Barata, Vítor Pereira, Ricardo Pires das Neves, Miguel Rocha
Reconstruction of cell-specific models capturing the influence of metabolism on DNA methylation in cancer. Comput. Biol. Medicine 170 (2024)
Fernando Cruz, João Capela, Eugénio C. Ferreira, Miguel Rocha, Oscar Días
BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (2) (2024)
Ana Marta Sequeira, Ivan Gomes, Miguel Rocha
Word embeddings for protein sequence analysis. CIBCB (2023)
Diego Troitiño-Jordedo, Lucas Carvalho, David Henriques, Vítor Pereira, Miguel Rocha, Eva Balsa-Canto
A New GIMME-Based Heuristic for Compartmentalised Transcriptomics Data Integration. PACBB (2023)
Emanuel Cunha, Miguel Silva, Inês Chaves, Hüseyin Demirci, Davide Lagoa, Diogo Lima, Miguel Rocha, Isabel Rocha, Oscar Días
The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber. PLoS Comput. Biol. 19 (9) (2023)
João Correia, Vitor Pereira, Miguel Rocha
Combining Evolutionary Algorithms with Reaction Rules Towards Focused Molecular Design. GECCO (2023)
Delora Baptista, Pedro G. Ferreira, Miguel Rocha
A systematic evaluation of deep learning methods for the prediction of drug synergy in cancer. PLoS Comput. Biol. 19 (3) (2023)
João Capela, João Correia, Vitor Pereira, Miguel Rocha
Development of Deep Learning approaches to predict relationships between chemical structures and sweetness. IJCNN (2022)
João Correia, Rafael Carreira, Vitor Pereira, Miguel Rocha
Predicting the number of biochemical transformations needed to synthesize a compound. IJCNN (2022)
Delora Baptista, João Correia, Bruno Pereira, Miguel Rocha
Evaluating molecular representations in machine learning models for drug response prediction and interpretability. J. Integr. Bioinform. 19 (3) (2022)
Ana Marta Sequeira, Diana Lousa, Miguel Rocha
ProPythia: A Python package for protein classification based on machine and deep learning. Neurocomputing 484 (2022)
Vítor Vieira, Jorge Ferreira, Miguel Rocha
A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale. PLoS Comput. Biol. 18 (6) (2022)
Miguel Martins, Miguel Rocha, Vitor Pereira
Variational Autoencoders and Evolutionary Algorithms for Targeted Novel Enzyme Design. CEC (2022)
Vitor Pereira, Pedro Sousa, Miguel Rocha
A comparison of multi-objective optimization algorithms for weight setting problems in traffic engineering. Nat. Comput. 21 (3) (2022)
Elsa Costa e Silva, Teresa Lino-Neto, Eugénia Ribeiro, Miguel Rocha, Manuel João Costa
Going virtual and going wide: comparing Team-Based Learning in-class versus online and across disciplines. Educ. Inf. Technol. 27 (2) (2022)
Tânia Barata, Vítor Vieira, Rúben Rodrigues, Ricardo Pires das Neves, Miguel Rocha
Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells. Comput. Biol. Medicine 142 (2022)