Nikolaos Alachiotis

ORCID

Publication Activity (10 Years)

Years Active: 1999-2021
Publications (10 Years): 19

Top Venues

Technical University Munich (PHD)

Education History

Technical University Munich

PHD

Publications

Hasan Irmak, Daniel Ziener, Nikolaos Alachiotis
Increasing Flexibility of FPGA-based CNN Accelerators with Dynamic Partial Reconfiguration. FPL (2021)
Hasan Irmak, Nikolaos Alachiotis, Daniel Ziener
An Energy-Efficient FPGA-based Convolutional Neural Network Implementation. SIU (2021)
Nikolaos Alachiotis, Andreas Brokalakis, Vasilis Amourgianos, Sotiris Ioannidis, Pavlos Malakonakis, Tasos Bokalidis
Accelerating Phylogenetics Using FPGAs in the Cloud. IEEE Micro 41 (4) (2021)
Bastian Pfeifer, Andrei Voicu-Spineanu, Michael G. Schimek, Nikolaos Alachiotis
Integrative hierarchical ensemble clustering for improved disease subtype discovery. BIBM (2021)
Nikolaos Alachiotis, Panagiotis Skrimponis, Emmanouil Pissadakis, Sundeep Rangan, Dionisios N. Pnevmatikatos
Near-memory Acceleration for Scalable Phylogenetic Inference. FPGA (2020)
Nikolaos Alachiotis, Charalampos Vatsolakis, Grigorios Chrysos, Dionisios N. Pnevmatikatos
RAiSD-X: A Fast and Accurate FPGA System for the Detection of Positive Selection in Thousands of Genomes. ACM Trans. Reconfigurable Technol. Syst. 13 (1) (2020)
Charalampos Theodoris, Nikolaos Alachiotis, Tze Meng Low, Pavlos Pavlidis
qLD: High-performance Computation of Linkage Disequilibrium on CPU and GPU. BIBE (2020)
Pavlos Malakonakis, Andreas Brokalakis, Nikolaos Alachiotis, Euripides Sotiriades, Apostolos Dollas
Exploring Modern FPGA Platforms for Faster Phylogeny Reconstruction with RAxML. BIBE (2020)
Panagiotis Skrimponis, Emmanouil Pissadakis, Nikolaos Alachiotis, Dionisios N. Pnevmatikatos
Accelerating Binarized Convolutional Neural Networks with Dynamic Partial Reconfiguration on Disaggregated FPGAs. PARCO (2019)
Nikolaos Alachiotis, Charalampos Vatsolakis, Grigorios Chrysos, Dionisios N. Pnevmatikatos
Accelerated Inference of Positive Selection on Whole Genomes. FPL (2018)
Dimitris Theodoropoulos, Andrea Reale, Dimitris Syrivelis, Maciej Bielski, Nikolaos Alachiotis, Dionisios N. Pnevmatikatos
REMAP: Remote mEmory Manager for disAggregated Platforms. ASAP (2018)
Maciej Bielski, Ilias Syrigos, Kostas Katrinis, Dimitris Syrivelis, Andrea Reale, Dimitris Theodoropoulos, Nikolaos Alachiotis, Dionisis N. Pnevmatikatos, E. H. Pap, George Zervas, V. Mishra, A. Saljoghei, Alvise Rigo, Jose Fernando Zazo, Sergio López-Buedo, Martí Torrents, Ferad Zyulkyarov, Michael Enrico, Óscar González de Dios
dReDBox: Materializing a full-stack rack-scale system prototype of a next-generation disaggregated datacenter. DATE (2018)
Emmanouil Pissadakis, Nikolaos Alachiotis, Panagiotis Skrimponis, Dimitris Theodoropoulos, Thanasis Korakis, Dionisios N. Pnevmatikatos
ReFiRe: Efficient Deployment of Remote Fine-Grained Reconfigurable Accelerators. FPT (2018)
Dimitrios Bozikas, Nikolaos Alachiotis, Pavlos Pavlidis, Euripides Sotiriades, Apostolos Dollas
Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium. FPL (2017)
Dimitris Theodoropoulos, Nikolaos Alachiotis, Dionisios N. Pnevmatikatos
Multi-FPGA Evaluation Platform for Disaggregated Computing. FCCM (2017)
Nikolaos Alachiotis, Dimitris Theodoropoulos, Dionisios N. Pnevmatikatos
Versatile deployment of FPGA accelerators in disaggregated data centers: A bioinformatics case study. FPL (2017)
Dimitris Theodoropoulos, Nikolaos Alachiotis, Dionisios N. Pnevmatikatos
FPGA-based evaluation platform for disaggregated computing. SAMOS (2017)
Nikolaos Alachiotis, Doru-Thom Popovici, Tze Meng Low
Efficient Computation of Linkage Disequilibria as Dense Linear Algebra Operations. IPDPS Workshops (2016)
Nikolaos Alachiotis, Gabriel Weisz
High Performance Linkage Disequilibrium: FPGAs Hold the Key. FPGA (2016)
Nikolaos Alachiotis
Generating FPGA accelerators for chemical similarity assessment. FPL (2015)
Qi Guo, Tze Meng Low, Nikolaos Alachiotis, Berkin Akin, Larry T. Pileggi, James C. Hoe, Franz Franchetti
Enabling portable energy efficiency with memory accelerated library. MICRO (2015)
Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
libgapmis: extending short-read alignments. BMC Bioinform. 14 (S-11) (2013)
Fernando Izquierdo-Carrasco, Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
A Generic Vectorization Scheme and a GPU Kernel for the Phylogenetic Likelihood Library. IPDPS Workshops (2013)
Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis
Libgapmis: An ultrafast library for short-read single-gap alignment. BIBM Workshops (2012)
Simon A. Berger, Nikolaos Alachiotis, Alexandros Stamatakis
An Optimized Reconfigurable System for Computing the Phylogenetic Likelihood Function on DNA Data. IPDPS Workshops (2012)
Nikolaos Alachiotis, Alexandros Stamatakis, Pavlos Pavlidis
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets. Bioinform. 28 (17) (2012)
Nikolaos Alachiotis, Vasilios I. Kelefouras, George Athanasiou, Harris E. Michail, Angeliki Kritikakou, Costas E. Goutis
A data locality methodology for matrix-matrix multiplication algorithm. J. Supercomput. 59 (2) (2012)
Nikolaos Alachiotis, Pavlos Pavlidis, Alexandros Stamatakis
Exploiting Multi-grain Parallelism for Efficient Selective Sweep Detection. ICA3PP (1) (2012)
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel. BMC Bioinform. 13 (2012)
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
A versatile UDP/IP based PC ↔ FPGA communication platform. ReConFig (2012)
Vasilios I. Kelefouras, George Athanasiou, Nikolaos Alachiotis, Harris E. Michail, Angeliki Kritikakou, Costas E. Goutis
A Methodology for Speeding Up Fast Fourier Transform Focusing on Memory Architecture Utilization. IEEE Trans. Signal Process. 59 (12) (2011)
Nikolaos Alachiotis, Alexandros Stamatakis
A Vector-Like Reconfigurable Floating-Point Unit for the Logarithm. Int. J. Reconfigurable Comput. 2011 (2011)
Nikolaos Alachiotis, Alexandros Stamatakis
FPGA Acceleration of the Phylogenetic Parsimony Kernel? FPL (2011)
Nikolaos Alachiotis, Alexandros Stamatakis
FPGA Optimizations for a Pipelined Floating-Point Exponential Unit. ARC (2011)
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
Accelerating Phylogeny-Aware Short DNA Read Alignment with FPGAs. FCCM (2011)
Nikolaos Alachiotis, Simon A. Berger, Alexandros Stamatakis
Efficient PC-FPGA Communication over Gigabit Ethernet. CIT (2010)
Athanasios Milidonis, Nikolaos Alachiotis, Vasileios Porpodas, Harris E. Michail, George A. Panagiotakopoulos, Athanasios P. Kakarountas, Costas E. Goutis
Decoupled Processors Architecture for Accelerating Data Intensive Applications using Scratch-Pad Memory Hierarchy. J. Signal Process. Syst. 59 (3) (2010)
Alexandros Stamatakis, Nikolaos Alachiotis
Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data. Bioinform. 26 (12) (2010)
Nikolaos Alachiotis, Alexandros Stamatakis
Efficient floating-point logarithm unit for FPGAs. IPDPS Workshops (2010)
Nikolaos Alachiotis, Euripides Sotiriades, Apostolos Dollas, Alexandros Stamatakis
Exploring FPGAs for accelerating the phylogenetic likelihood function. IPDPS (2009)
Nikolaos Alachiotis, Alexandros Stamatakis, Euripides Sotiriades, Apostolos Dollas
A reconfigurable architecture for the Phylogenetic Likelihood Function. FPL (2009)
Athanasios Milidonis, Vasileios Porpodas, Nikolaos Alachiotis, Athanasios P. Kakarountas, Harris E. Michail, George A. Panagiotakopoulos, Costas E. Goutis
Low-power architecture with scratch-pad memory for accelerating embedded applications with run-time reuse. IET Comput. Digit. Tech. 3 (1) (2009)
Athanasios Milidonis, Nikolaos Alachiotis, Vasileios Porpodas, Haralambos Michail, Athanasios Kakarountas, Constantinos E. Goutis
Interactive presentation: A decoupled architecture of processors with scratch-pad memory hierarchy. DATE (2007)
A. P. Kakaroudas, Kyriakos Papadomanolakis, E. Karaolis, Spiros Nikolaidis, Nikolaos Alachiotis, Costas E. Goutis
Hardware and Power Requirements of Self-checking circuits. ICECS (1999)

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Publication Activity (10 Years)

Top Topics

Top Venues

Nikolaos Alachiotis