Pavlos Pavlidis

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 9

Top Topics

Markov Chain Monte Carlo

Natural Selection

Linkage Disequilibrium

Top Venues

Publications

Hanqing Zhao, Matthijs Leon Souilljee, Pavlos Pavlidis, Nikolaos Alachiotis
Genome-wide scans for selective sweeps using convolutional neural networks. Bioinform. 39 (Supplement-1) (2023)
Hanqing Zhao, Pavlos Pavlidis, Nikolaos Alachiotis
SweepNet: A Lightweight CNN Architecture for the Classification of Adaptive Genomic Regions. PASC (2023)
Aristeidis Litos, Evangelia Intze, Pavlos Pavlidis, Ilias Lagkouvardos
Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time. Frontiers Bioinform. 2 (2022)
Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides
Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs. Bioinform. 37 (13) (2021)
Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides
Efficient Dynamic Analysis of Low-similarity Proteins for Structural Class Prediction. EUSIPCO (2020)
Charalampos Theodoris, Nikolaos Alachiotis, Tze Meng Low, Pavlos Pavlidis
qLD: High-performance Computation of Linkage Disequilibrium on CPU and GPU. BIBE (2020)
Dimitrios Bozikas, Nikolaos Alachiotis, Pavlos Pavlidis, Euripides Sotiriades, Apostolos Dollas
Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium. FPL (2017)
Duo Xu, Yousef Jaber, Pavlos Pavlidis, Omer Gokcumen
VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences. BMC Bioinform. 18 (1) (2017)
Paschalia Kapli, Sarah Lutteropp, Jiajie Zhang, Kassian Kobert, Pavlos Pavlidis, Alexandros Stamatakis, Tomás Flouri
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinform. 33 (11) (2017)
Marc Pybus, Giovanni Marco Dall'Olio, Pierre Luisi, Manu Uzkudun, Angel Carreño-Torres, Pavlos Pavlidis, Hafid Laayouni, Jaume Bertranpetit, Johannes Engelken
1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans. Nucleic Acids Res. 42 (Database-Issue) (2014)
Solon P. Pissis, Christian Goll, Pavlos Pavlidis, Alexandros Stamatakis
Accelerating String Matching on MIC Architecture for Motif Extraction. PPAM (2) (2013)
Solon P. Pissis, Alexandros Stamatakis, Pavlos Pavlidis
MoTeX: A word-based HPC tool for MoTif eXtraction. BCB (2013)
Jiajie Zhang, Paschalia Kapli, Pavlos Pavlidis, Alexandros Stamatakis
A general species delimitation method with applications to phylogenetic placements. Bioinform. 29 (22) (2013)
Nikolaos Alachiotis, Alexandros Stamatakis, Pavlos Pavlidis
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets. Bioinform. 28 (17) (2012)
Nikolaos Alachiotis, Pavlos Pavlidis, Alexandros Stamatakis
Exploiting Multi-grain Parallelism for Efficient Selective Sweep Detection. ICA3PP (1) (2012)
Pavlos Pavlidis, Panayiota Poirazi
Individualized markers optimize class prediction of microarray data. BMC Bioinform. 7 (2006)