Accelerating Phylogeny-Aware Short DNA Read Alignment with FPGAs.

Nikolaos Alachiotis Simon A. Berger Alexandros Stamatakis

Published in: FCCM (2011)

Keyphrases

multiple sequence alignment
biological sequences
rna sequences
sequence data
dna computing
dynamic time warping
field programmable gate array
dna sequencing
phylogenetic trees
sequence analysis
embedded systems
binding sites
image alignment
hardware software