Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.
Nikolaos AlachiotisSimon A. BergerAlexandros StamatakisPublished in: BMC Bioinform. (2012)
Keyphrases
- profile hidden markov models
- sequence data
- multiple sequence alignment
- parallel architectures
- kernel function
- single instruction multiple data
- parallel algorithm
- kernel methods
- massively parallel
- image alignment
- parallel processing
- support vector
- kernel space
- memory efficient
- kernel machines
- kernel regression
- highly parallel
- real time
- biological sequences
- parallel implementation
- word alignment
- input space
- component analysis
- kernel density estimation
- graph kernels
- sequence alignment
- parallel computers
- array processor
- object detection