Mohammad Zubair

ORCID

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 34

Top Venues

CoRR

HiPC

IEEE ACM Trans. Comput. Biol. Bioinform.

IA3@SC

Publications

Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric J. Nielsen, Boris Diskin, Marc F. Paterno, Samuel Jung, Joshua Hoke Davis
Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics. HiPC (2023)
Mohammad Zubair, Christoph Bauinger
Performance Optimization of Deep Learning Sparse Matrix Kernels on Intel Max Series GPU. CoRR (2023)
Mohammad Zubair, Sachin Kansal, Sudipto Mukherjee
Investigating the vision-based intervertebral motion estimation of the Cadaver's craniovertebral junction. Robotica 41 (10) (2023)
Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
Porting numerical integration codes from CUDA to oneAPI: a case study. CoRR (2023)
Mohammad Zubair, Aaron Walden, Gabriel Nastac, Eric J. Nielsen, Christoph Bauinger, Xiao Zhu
Optimization of Ported CFD Kernels on Intel Data Center GPU Max 1550 using oneAPI ESIMD. SC Workshops (2023)
Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
Porting Numerical Integration Codes from CUDA to oneAPI: A Case Study. ISC (2023)
Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
m-Cubes: An Efficient and Portable Implementation of Multi-dimensional Integration for GPUs. ISC (2022)
Mohammad Zubair, Seul Jung
Design and Analysis of Flexure Joint for a Flexible Robotic Arm. ASCC (2022)
Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
m-CUBES An efficient and portable implementation of multi-dimensional integration for gpus. CoRR (2022)
Mohammad Zubair, Bhivraj Suthar, Seul Jung
Design and Analysis of Flexure Mechanisms for Human Hand Tremor Compensation. IEEE Access 10 (2022)
Jason Orender, Mohammad Zubair, Jiangwen Sun
LASSO Logic Engine: harnessing the logic parsing capabilities of the LASSO algorithm for longitudinal feature learning. Big Data (2022)
Mohammad Zubair, Sachin Kansal, Sudipto Mukherjee
Vision-based pose estimation of craniocervical region: experimental setup and saw bone-based study. Robotica 40 (6) (2022)
Aaron Walden, Mohammad Zubair, Christopher P. Stone, Eric J. Nielsen
Memory Optimizations for Sparse Linear Algebra on GPU Hardware. MCHPC@SC (2021)
Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
PAGANI: a parallel adaptive GPU algorithm for numerical integration. SC (2021)
Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, Harold Riethman
Analysis of Subtelomeric REXTAL Assemblies Using QUAST. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Christopher P. Stone, Aaron Walden, Mohammad Zubair, Eric J. Nielsen
Accelerating unstructured-grid CFD algorithms on NVIDIA and AMD GPUs. IA3@SC (2021)
Shubham Bhandari, Rohit Bindal, Payal Sharma, Mohammad Zubair, Divanshu Jain
Design of Robotic Hand And Wireless Glove to Tele-Operate. AIR (2021)
Ioannis Sakiotis, Kamesh Arumugam, Marc Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
PAGANI: A Parallel Adaptive GPU Algorithm for Numerical. CoRR (2021)
Mohammad Zubair, Yejin Choi, Bhivraj Suthar, Seul Jung
Vibration Suppression Mechanism for Foldable Robot Arm for Drones. UR (2021)
Jason Orender, Ravi Mukkamala, Mohammad Zubair
Is Ethereum's ProgPoW ASIC Resistant? ICISSP (2020)
Aaron C. Walden, Mohammad Zubair, Eric J. Nielsen
Performance and Portability of a Linear Solver Across Emerging Architectures. WACCPD@SC (2020)
Ioannis Sakiotis, Kamesh Arumugam, Desh Ranjan, Balsa Terzic, Mohammad Zubair
Efficient Parallel Multi-bunch Beam-Beam Simulation in Particle Colliders. HiPC (2019)
Aaron Walden, Eric J. Nielsen, Boris Diskin, Mohammad Zubair
A Mixed Precision Multicolor Point-Implicit Solver for Unstructured Grids on GPUs. IA3@SC (2019)
Mohammad Zubair, James Warner, David Wagner
Optimization of a Solver for Computational Materials and Structures Problems on NVIDIA Volta and AMD Instinct GPUs. ScalA@SC (2019)
Tunazzina Islam, Desh Ranjan, Eleanor Young, Ming Xiao, Mohammad Zubair, Harold Riethman
REXTAL: Regional Extension of Assemblies Using Linked-Reads. ISBRA (2018)
Kamesh Arumugam, Ravi Teja Majeti, Desh Ranjan, Mohammad Zubair, Alexander N. Godunov, Balsa Terzic
GPU-accelerated high-fidelity simulation of beam-beam effects in particle colliders. SummerSim (2017)
Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (3) (2017)
Sahil Zubair, Mohammad Zubair
Learning Word Embeddings in Parallel by Alignment. HPCS (2017)
Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Balsa Terzic, Alexander N. Godunov, Tunazzina Islam
A Machine Learning Approach for Efficient Parallel Simulation of Beam Dynamics on GPUs. ICPP (2017)
Matthew Dixon, Jörg Lotze, Mohammad Zubair
A portable, extensible and fast stochastic volatility model calibration using multi and many-core processors. Concurr. Comput. Pract. Exp. 28 (3) (2016)
Mohammad Zubair, Eric J. Nielsen, Justin Luitjens, Dana Hammond
An Optimized Multicolor Point-Implicit Solver for Unstructured Grid Applications on Graphics Processing Units. IA3@SC (2016)
Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Balsa Terzic, Alexander N. Godunov
Memory-Efficient Parallel Simulation of Electron Beam Dynamics Using GPUs. HiPC (2016)
Devin Haslam, Mohammad Zubair, Desh Ranjan, Abhishek Biswas, Jing He
Challenges in matching secondary structures in cryo-EM: An exploration. BIBM (2016)
Aaron Walden, Sabbir Ahmed Khan, Bálint Joó, Desh Ranjan, Mohammad Zubair
Optimizing a Multiple Right-Hand Side Dslash Kernel for Intel Knights Corner. ISC Workshops (2016)
Abhishek Biswas, David Gauthier, Desh Ranjan, Mohammad Zubair
ISQuest: finding insertion sequences in prokaryotic sequence fragment data. Bioinform. 31 (21) (2015)
Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He
A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data. J. Comput. Biol. 22 (9) (2015)
Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Alexander N. Godunov, Balsa Terzic
High-fidelity simulation of collective effects in electron beams using an innovative parallel method. SummerSim (2015)
Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He
A Novel Computational Method for Deriving Protein Secondary Structure Topologies Using Cryo-EM Density Maps and Multiple Secondary Structure Predictions. ISBRA (2015)
Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
Maximal clique enumeration for large graphs on hadoop framework. PPAA@PPoPP (2014)
Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
ParK: An efficient algorithm for k-core decomposition on multicore processors. IEEE BigData (2014)
Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
pbitMCE: A bit-based approach for maximal clique enumeration on multicore processors. ICPADS (2014)
Matthew Dixon, Sabbir Ahmed Khan, Mohammad Zubair
using GPUs. SpringSim (HPS) (2014)
Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He
Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (2) (2014)
Matthew Dixon, Jörg Lotze, Mohammad Zubair
A portable and fast stochastic volatility model calibration using multi and many-core processors. WHPCF@SC (2014)
Abhishek Biswas, David Gauthier, Desh Ranjan, Mohammad Zubair
Big data challenges for estimating genome assembler quality. BCB (2014)
Kamesh Arumugam, Alexander N. Godunov, Desh Ranjan, Balsa Terzic, Mohammad Zubair
A memory efficient algorithm for adaptive multidimensional integration with multiple GPUs. HiPC (2013)
Abhishek Biswas, Desh Ranjan, Mohammad Zubair
Genome Assembly on a Multicore System. TrustCom/ISPA/IUCC (2013)
Kamesh Arumugam, Alexander N. Godunov, Desh Ranjan, Balsa Terzic, Mohammad Zubair
An Efficient Deterministic Parallel Algorithm for Adaptive Multidimensional Numerical Integration on GPUs. ICPP (2013)
Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
High-performance implementation of planted motif problem on multicore and GPU. Concurr. Comput. Pract. Exp. 25 (10) (2013)
Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He
A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB (2013)
Matthew Dixon, Mohammad Zubair
Calibration of stochastic volatility models on a multi-core CPU cluster. WHPCF@SC (2013)
Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. 10 (3) (2012)
Desh Ranjan, John E. Savage, Mohammad Zubair
Upper and lower I/O bounds for pebbling r-pyramids. J. Discrete Algorithms 14 (2012)
Desh Ranjan, Mohammad Zubair
Vertex isoperimetric parameter of a Computation Graph. Int. J. Found. Comput. Sci. 23 (4) (2012)
Michael Creel, Mohammad Zubair
High Performance Implementation of an Econometrics and Financial Application on GPUs. SC Companion (2012)
Dazhi Chong, Samuel Coppage, Xiangyi Gu, Kurt Maly, Harris Wu, Mohammad Zubair
Social Curation of large multimedia collections on the cloud. DH (2012)
Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB (2012)
Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM (2011)
Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
High performance implementation of planted motif problem using suffix trees. HPCS (2011)
Hui Shi, Kurt Maly, Steven J. Zeil, Mohammad Zubair
Comparison of ontology reasoning systems using custom rules. WIMS (2011)
Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. 9 (3) (2011)
Ashraf Yaseen, Kurt Maly, Steven J. Zeil, Mohammad Zubair
Performance Evaluation of Oracle Semantic Technologies with Respect to User Defined Rules. DEXA Workshops (2011)
Desh Ranjan, John E. Savage, Mohammad Zubair
Strong I/O Lower Bounds for Binomial and FFT Computation Graphs. COCOON (2011)
Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
An efficient multicore implementation of planted motif problem. HPCS (2010)
John E. Savage, Mohammad Zubair
Cache-optimal algorithms for option pricing. ACM Trans. Math. Softw. 37 (1) (2010)
Desh Ranjan, John E. Savage, Mohammad Zubair
-Pyramids. IWOCA (2010)
Hady S. AbdelSalam, Kurt Maly, Ravi Mukkamala, Mohammad Zubair, David Kaminsky
Scheduling-capable autonomic manager for policy-based IT change management system. Enterp. Inf. Syst. 4 (4) (2010)
Kurt Maly, Harris Wu, Mohammad Zubair
A collaborative faceted categorization system - user interactions. ELPUB (2010)
Liuliu Fu, Kurt Maly, Harris Wu, Mohammad Zubair
Building Dynamic Image Collections from Internet. DH (2010)
Victor Antonov, Kurt Maly, Mohammad Zubair, Harris Wu
Automated Support for a Collaborative System to Organize a Collection using Facets. ELPUB (2009)
Hady S. AbdelSalam, Kurt Maly, Ravi Mukkamala, Mohammad Zubair, David Kaminsky
Towards Energy Efficient Change Management in a Cloud Computing Environment. AIMS (2009)
John E. Savage, Mohammad Zubair
Evaluating multicore algorithms on the unified memory model. Sci. Program. 17 (4) (2009)
Mahantesh Halappanavar, Amit Kumar, Ravi Mukkamala, Mohammad Zubair
Efficient Parallel Implementations of Binomial Tree Option Price Valuation. PDCCS (2008)
Ashraf Amrou, Kurt Maly, Mohammad Zubair
Freelib: a peer-to-peer-based digital library architecture. World Digit. Libr. 1 (2) (2008)
Mohammad Zubair, Ravi Mukkamala
High Performance Implementation of Binomial Option Pricing. ICCSA (1) (2008)
John E. Savage, Mohammad Zubair
A unified model for multicore architectures. IFMT (2008)
Kailash Bhoopalam, Kurt Maly, Ravi Mukkamala, Mohammad Zubair
Framework for Information Sharing Across Multiple Government Agencies under Dynamic Access Policies. ARES (2007)
Harris Wu, Mohammad Zubair, Kurt Maly
Collaborative classification of growing collections with evolving facets. Hypertext (2007)
Paul Flynn, Li Zhou, Kurt Maly, Steven J. Zeil, Mohammad Zubair
Automated Template-Based Metadata Extraction Architecture. ICADL (2007)
Kurt Maly, Steven J. Zeil, Mohammad Zubair, Ashraf Amrou, Ali Aazhar, Naveen Ratkal
A Scriptable, Statistical Oracle for a Metadata Extraction System. QSIC (2007)
Hady S. AbdelSalam, Kurt Maly, Ravi Mukkamala, Mohammad Zubair
Infrastructure-Aware Autonomic Manager for Change Management. POLICY (2007)
Frank McCown, Xiaoming Liu, Michael L. Nelson, Mohammad Zubair
Search Engine Coverage of the OAI-PMH Corpus. IEEE Internet Comput. 10 (2) (2006)
F. Jayakanth, Kurt Maly, Mohammad Zubair, L. Aswath
A dynamic approach to make CDS/ISIS databases interoperable over the internet using the OAI protocol. Program 40 (3) (2006)
Kurt Maly, Mohammad Zubair, H. Siripuram, S. Zunjarwad
Synchronization and Multiple Group Server Support for Kepler. ICEIS (1) (2006)
Ashraf Amrou, Kurt Maly, Mohammad Zubair
Freelib: Peer-to-peer-based Digital Libraries. AINA (1) (2006)
Jianfeng Tang, Kurt Maly, Steven J. Zeil, Mohammad Zubair
Automated Building of OAI Compliant Repository from Legacy Collection. ELPUB (2006)
Harris Wu, Mohammad Zubair, Kurt Maly
Harvesting social knowledge from folksonomies. Hypertext (2006)
Kurt Maly, Mohammad Zubair, Li Xuemei
A High Performance Implementation of an OAI-Based Federation Service. ICPADS (1) (2005)
Hesham Anan, Kurt Maly, Mohammad Zubair
Efficient Discovery Service for a Digital Library of 3D Models. 3DIM (2005)
Kurt Maly, Mohammad Zubair, Vamshi Chilukamarri, Pratik Kothari
GRID Based Federated Digital Library. Conf. Computing Frontiers (2005)
Kailash Bhoopalam, Kurt Maly, Frank McCown, Ravi Mukkamala, Mohammad Zubair
A Standards-Based Approach for Supporting Dynamic Access Policies for a Federated Digital Library. ICADL (2005)
Xiaoming Liu, Kurt Maly, Michael L. Nelson, Mohammad Zubair
Lessons Learned with Arc, an OAI-PMH Service Provider. Libr. Trends 53 (4) (2005)
Kailash Bhoopalam, Kurt Maly, Ravi Mukkamala, Mohammad Zubair, D. Agrawal, David Kaminsky
A Comparative Study of Specification Models for Autonomic Access Control of Digital Rights. DRMTICS (2005)
F. Jayakanth, Kurt Maly, Mohammad Zubair, L. Aswath
Approaches to make CDS/ISIS databases interoperable with OAI-compliant digital libraries. Program 39 (3) (2005)
Kailash Bhoopalam, Kurt Maly, Frank McCown, Ravi Mukkamala, Mohammad Zubair
A Flexible Framework for Content-Based Access Management for Federated Digital Libraries. ECDL (2005)
Haseebulla M. Khan, Kurt Maly, Mohammad Zubair
Similarity and Duplicate Detection System for an OAI Compliant Federated Digital Library. ECDL (2005)
Kurt Maly, Michael L. Nelson, Mohammad Zubair, Ashraf Amrou, Sathish Kothamasa, Lan Wang, Richard Luce
Enhancing Kepler Usability and Performance. ECDL (2004)
Kurt Maly, Michael L. Nelson, Mohammad Zubair, Ashraf Amrou, S. Kothasama, Lan Wang, Richard Luce
Light-weight communal digital libraries. JCDL (2004)
Kailash Bhoopalam, Kurt Maly, Mohammad Zubair, Ravi Mukkamala
Access Management in Federated Digital Libraries. ICWI (2004)
Hesham Anan, Jianfeng Tang, Kurt Maly, Michael L. Nelson, Mohammad Zubair, Zhao Yang
Challenges in Building Federation Services over Harvested Metadata. ICADL (2003)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mohammad Zubair