Kamal Al-Nasr

Publication Activity (10 Years)

Years Active: 2009-2021
Publications (10 Years): 8

Top Topics

Skeleton Extraction

Secondary Structure

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

Publications

Ali Sekmen, Kamal Al-Nasr, Christopher Jones
Subspace Modeling for Classification of Protein Secondary Structure Elements from Cα Trace. BIBM (2021)
Jing He, Kamal Al-Nasr, Weitao Sun, Yonggang Lu
Preface: The 9th Computational Structural Bioinformatics Workshop. J. Comput. Biol. 25 (1) (2018)
Kamal Al-Nasr, Christopher Jones, Feras Yousef, Ruba Jebril
: A Coarse-Grained Method to Validate Protein Candidate Models. J. Comput. Biol. 25 (1) (2018)
Kamal Al-Nasr, Feras Yousef, Christopher Jones, Ruba Jebril
Geometry Analysis for Protein Secondary Structures Matching Problem. BCB (2017)
Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (3) (2017)
Kamal Al-Nasr, Christopher Jones, Bashar Aboona, Abdulrahman Alanazi
An efficient method for validating protein models using electron microscopy data. BIBM (2016)
Kamal Al-Nasr, Jing He
Constrained cyclic coordinate descent for cryo-EM images at medium resolutions: beyond the protein loop closure problem. Robotica 34 (8) (2016)
Kamal Al-Nasr, Jing He
Deriving Protein Backbone Using Traces Extracted from Density Maps at Medium Resolutions. ISBRA (2015)
Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He
Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (2) (2014)
Kamal Al-Nasr, Jing He
Construction of protein backbone pieces using segment-based FBCCD and Cryo-EM skeleton. BCB (2014)
Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge
A Graph Approach to Bridge the Gaps in Volumetric Electron Cryo-microscopy Skeletons. ISBRA (2013)
Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, Jing He
Intensity-Based Skeletonization of CryoEM Gray-Scale Images Using a True Segmentation-Free Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (5) (2013)
Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He
A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB (2013)
Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. 10 (3) (2012)
Andrew McKnight, Kamal Al-Nasr, Dong Si, Andrey N. Chernikov, Nikos Chrisochoides, Jing He
CryoEM skeleton length estimation using a decimated curve. BIBM Workshops (2012)
Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB (2012)
Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM (2011)
Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. 9 (3) (2011)
Kamal Al-Nasr, Weitao Sun, Jing He
Structure prediction for the helical skeletons detected from the low resolution protein density map. BMC Bioinform. 11 (S-1) (2010)
Kamal Al-Nasr, Jing He
An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent. Int. J. Data Min. Bioinform. 3 (3) (2009)