Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm.
Kamal Al-NasrDesh RanjanMohammad ZubairLin ChenJing HePublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2014)
Keyphrases
- shortest path
- shortest path problem
- finding the shortest path
- weighted graph
- path length
- expectation maximization
- shortest path algorithm
- optimal path
- dynamic programming
- minimum spanning tree
- secondary structure
- edge weights
- graph search
- steiner tree
- flow graph
- neural network
- random walk
- rna secondary structures
- strongly connected components
- dijkstra algorithm
- social networks
- rna secondary structure prediction
- minimum length