Tzong-Yi Lee

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 44

Top Topics

Mass Spectrometry

Machine Learning

Regulatory Networks

Experimentally Validated

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

BMC Syst. Biol.

Publications

Lantian Yao, Peilin Xie, Jiahui Guan, Chia-Ru Chung, Yixian Huang, Yuxuan Pang, Huacong Wu, Ying-Chih Chiang, Tzong-Yi Lee
CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network. J. Chem. Inf. Model. 64 (14) (2024)
Jiahui Guan, Lantian Yao, Chia-Ru Chung, Peilin Xie, Yilun Zhang, Junyang Deng, Ying-Chih Chiang, Tzong-Yi Lee
Predicting Anti-inflammatory Peptides by Ensemble Machine Learning and Deep Learning. J. Chem. Inf. Model. 63 (24) (2023)
Renfei Ma, Shangfu Li, Wenshuo Li, Lantian Yao, Hsien-Da Huang, Tzong-Yi Lee
KinasePhos 3.0: Redesign and Expansion of the Prediction on Kinase-specific Phosphorylation Sites. Genom. Proteom. Bioinform. 21 (1) (2023)
Renfei Ma, Shangfu Li, Luca Parisi, Wenshuo Li, Hsien-Da Huang, Tzong-Yi Lee
Holistic similarity-based prediction of phosphorylation sites for understudied kinases. Briefings Bioinform. 24 (2) (2023)
Rulan Wang, Chia-Ru Chung, Hsien-Da Huang, Tzong-Yi Lee
Identification of species-specific RNA N6-methyladinosine modification sites from RNA sequences. Briefings Bioinform. 24 (2) (2023)
Mengqi Luo, Shangfu Li, Yuxuan Pang, Lantian Yao, Renfei Ma, Hsi-Yuan Huang, Hsien-Da Huang, Tzong-Yi Lee
Extraction of microRNA-target interaction sentences from biomedical literature by deep learning approach. Briefings Bioinform. 24 (1) (2023)
Zhuo Wang, Yuxuan Pang, Chia-Ru Chung, Hsin-Yao Wang, Haiyan Cui, Ying-Chih Chiang, Jorng-Tzong Horng, Jang-Jih Lu, Tzong-Yi Lee
using machine learning and mass spectrometry technology. Briefings Bioinform. 24 (6) (2023)
Jhih-Hua Jhong, Lantian Yao, Yuxuan Pang, Zhongyan Li, Chia-Ru Chung, Rulan Wang, Shangfu Li, Wenshuo Li, Mengqi Luo, Renfei Ma, Yuqi Huang, Xiaoning Zhu, Jiahong Zhang, Hexiang Feng, Qifan Cheng, Chunxuan Wang, Kun Xi, Li-Ching Wu, Tzu-Hao Chang, Jorng-Tzong Horng, Lizhe Zhu, Ying-Chih Chiang, Zhuo Wang, Tzong-Yi Lee
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data. Nucleic Acids Res. 50 (D1) (2022)
Yi-Gang Chen, Lantian Yao, Yun Tang, Jhih-Hua Jhong, Jingting Wan, Jingyue Chang, Shi-Dong Cui, Yijun Luo, Xiao-Xuan Cai, Wenshuo Li, Qi Chen, Hsi-Yuan Huang, Zhuo Wang, Weiming Chen, Tzu-Hao Chang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang
CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers. Nucleic Acids Res. 50 (D1) (2022)
Zhongyan Li, Shangfu Li, Mengqi Luo, Jhih-Hua Jhong, Wenshuo Li, Lantian Yao, Yuxuan Pang, Zhuo Wang, Rulan Wang, Renfei Ma, Jinhan Yu, Yuqi Huang, Xiaoning Zhu, Qifan Cheng, Hexiang Feng, Jiahong Zhang, Chunxuan Wang, Justin Bo-Kai Hsu, Wen-Chi Chang, Feng-Xiang Wei, Hsien-Da Huang, Tzong-Yi Lee
dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications. Nucleic Acids Res. 50 (D1) (2022)
Hsi-Yuan Huang, Yang-Chi-Dung Lin, Shi-Dong Cui, Yixian Huang, Yun Tang, Jia-Tong Xu, Jiayang Bao, Yulin Li, Jia Wen, Hua-Li Zuo, Weijuan Wang, Jing Li, Jie Ni, Yini Ruan, Liping Li, Yidan Chen, Yue-Yang Xie, Zihao Zhu, Xiao-Xuan Cai, Xin-Yi Chen, Lantian Yao, Yi-Gang Chen, Yijun Luo, Shupeng Luxu, Mengqi Luo, Chih-Min Chiu, Kun Ma, Lizhe Zhu, Gui-Juan Cheng, Chen Bai, Ying-Chih Chiang, Liping Wang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 50 (D1) (2022)
Yuxuan Pang, Lantian Yao, Jingyi Xu, Zhuo Wang, Tzong-Yi Lee
Integrating transformer and imbalanced multi-label learning to identify antimicrobial peptides and their functional activities. Bioinform. 38 (24) (2022)
Qiyang Wu, Tianyang Huang, Songyan Xia, Frank Otto, Tzong-Yi Lee, Hsien-Da Huang, Ying-Chih Chiang
On the force field optimisation of β-lactam cores using the force field Toolkit. J. Comput. Aided Mol. Des. 36 (7) (2022)
Yuxuan Pang, Zhuo Wang, Jhih-Hua Jhong, Tzong-Yi Lee
Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies. Briefings Bioinform. 22 (2) (2021)
Yu Wan, Zhuo Wang, Tzong-Yi Lee
Incorporating support vector machine with sequential minimal optimization to identify anticancer peptides. BMC Bioinform. 22 (1) (2021)
Zhongyan Li, Siyu Chen, Jhih-Hua Jhong, Yuxuan Pang, Kai-Yao Huang, Shangfu Li, Tzong-Yi Lee
UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase-substrate interactions. Database J. Biol. Databases Curation 2021 (2021)
Yuxuan Pang, Lantian Yao, Jhih-Hua Jhong, Zhuo Wang, Tzong-Yi Lee
AVPIden: a new scheme for identification and functional prediction of antiviral peptides based on machine learning approaches. Briefings Bioinform. 22 (6) (2021)
Hsin-Yao Wang, Chia-Ru Chung, Zhuo Wang, Shangfu Li, Bo-Yu Chu, Jorng-Tzong Horng, Jang-Jih Lu, Tzong-Yi Lee
A large-scale investigation and identification of methicillin-resistant Staphylococcus aureus based on peaks binning of matrix-assisted laser desorption ionization-time of flight MS spectra. Briefings Bioinform. 22 (3) (2021)
Mengqi Luo, Zhongyan Li, Shangfu Li, Tzong-Yi Lee
A representation and deep learning model for annotating ubiquitylation sentences stating E3 ligase - substrate interaction. BMC Bioinform. 22 (1) (2021)
Hui-Ju Kao, Van-Nui Nguyen, Kai-Yao Huang, Wen-Chi Chang, Tzong-Yi Lee
-spaced Amino Acid Pairs to Identify Protein Succinylation Sites. Genom. Proteom. Bioinform. 18 (2) (2020)
Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, Kai-Yao Huang, Sirjana Shrestha, Hsiao-Chin Hong, Yun Tang, Yi-Gang Chen, Chen-Nan Jin, Yuan Yu, Jia-Tong Xu, Yue-Ming Li, Xiao-Xuan Cai, Zhen-Yu Zhou, Xiao-Hang Chen, Yuan-Yuan Pei, Liang Hu, Jin-Jiang Su, Shi-Dong Cui, Fei Wang, Yue-Yang Xie, Si-Yuan Ding, Meng-Fan Luo, Chih-Hung Chou, Nai-Wen Chang, Kai-Wen Chen, Yu-Hsiang Cheng, Xin-Hong Wan, Wen-Lian Hsu, Tzong-Yi Lee, Feng-Xiang Wei, Hsien-Da Huang
miRTarBase 2020: updates to the experimentally validated microRNA?target interaction database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Chia-Ru Chung, Ting-Rung Kuo, Li-Ching Wu, Tzong-Yi Lee, Jorng-Tzong Horng
Characterization and identification of antimicrobial peptides with different functional activities. Briefings Bioinform. 21 (3) (2020)
Tzong-Yi Lee, Kai-Yao Huang, Cheng-Hsiang Chuang, Cheng-Yang Lee, Tzu-Hao Chang
Incorporating deep learning and multi-omics autoencoding for analysis of lung adenocarcinoma prognostication. Comput. Biol. Chem. 87 (2020)
Kai-Yao Huang, Hui-Ju Kao, Justin Bo-Kai Hsu, Shun-Long Weng, Tzong-Yi Lee
Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites. BMC Bioinform. (13) (2019)
Hsin-Yao Wang, Wen-Chi Li, Kai-Yao Huang, Chia-Ru Chung, Jorng-Tzong Horng, Jen-Fu Hsu, Jang-Jih Lu, Tzong-Yi Lee
Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques. BMC Bioinform. (19) (2019)
Jhih-Hua Jhong, Yu-Hsiang Chi, Wen-Chi Li, Tsai-Hsuan Lin, Kai-Yao Huang, Tzong-Yi Lee
dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data. Nucleic Acids Res. 47 (Database-Issue) (2019)
Chi-Nga Chow, Tzong-Yi Lee, Yu-Cheng Hung, Guan-Zhen Li, Kuan-Chieh Tseng, Ya-Hsin Liu, Po-Li Kuo, Han-Qin Zheng, Wen-Chi Chang
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. Nucleic Acids Res. 47 (Database-Issue) (2019)
Kai-Yao Huang, Tzong-Yi Lee, Hui-Ju Kao, Chen-Tse Ma, Chao-Chun Lee, Tsai-Hsuan Lin, Wen-Chi Chang, Hsien-Da Huang
dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications. Nucleic Acids Res. 47 (Database-Issue) (2019)
Hsin-Yao Wang, Shih-Cheng Chang, Wan-Ying Lin, Chun-Hsien Chen, Szu-Hsien Chiang, Kai-Yao Huang, Bo-Yu Chu, Jang-Jih Lu, Tzong-Yi Lee
Machine Learning-Based Method for Obesity Risk Evaluation Using Single-Nucleotide Polymorphisms Derived from Next-Generation Sequencing. J. Comput. Biol. 25 (12) (2018)
Chi-Nga Chow, Yi-Fan Chiang-Hsieh, Chia-Hung Chien, Han-Qin Zheng, Tzong-Yi Lee, Nai-Yun Wu, Kuan-Chieh Tseng, Ping-Fu Hou, Wen-Chi Chang
Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. BMC Genom. 19 (S2) (2018)
Shun-Long Weng, Kai-Yao Huang, Julia Tzu-Ya Weng, Fang-Yu Hung, Tzu-Hao Chang, Tzong-Yi Lee
Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes. Briefings Bioinform. 19 (6) (2018)
Van-Nui Nguyen, Kai-Yao Huang, Chien-Hsun Huang, K. Robert Lai, Tzong-Yi Lee
A New Scheme to Characterize and Identify Protein Ubiquitination Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Hui-Ju Kao, Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Justin Bo-Kai Hsu, Chien-Hsun Huang, Tzong-Yi Lee
MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs. BMC Syst. Biol. 11 (S-7) (2017)
Min-Gang Su, Julia Tzu-Ya Weng, Justin Bo-Kai Hsu, Kai-Yao Huang, Yu-Hsiang Chi, Tzong-Yi Lee
Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions. BMC Syst. Biol. 11 (S-7) (2017)
Kai-Yao Huang, Tzu-Hao Chang, Jhih-Hua Jhong, Yu-Hsiang Chi, Wen-Chi Li, Chien-Lung Chan, K. Robert Lai, Tzong-Yi Lee
Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas. BMC Syst. Biol. 11 (S-7) (2017)
Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Chien-Hsun Huang, Hui-Ju Kao, Tzu-Hao Chang, Hsin-Yao Wang, Jang-Jih Lu, Tzong-Yi Lee
Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features. BMC Bioinform. 18 (S-3) (2017)
Van-Minh Bui, Shun-Long Weng, Cheng-Tsung Lu, Tzu-Hao Chang, Julia Tzu-Ya Weng, Tzong-Yi Lee
-sulfenylation sites. BMC Genom. 17 (S-1) (2016)
Kai-Yao Huang, Julia Tzu-Ya Weng, Tzong-Yi Lee, Shun-Long Weng
A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases. BMC Syst. Biol. 10 (S-1) (2016)
Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee
dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins. Nucleic Acids Res. 44 (Database-Issue) (2016)
Van-Minh Bui, Cheng-Tsung Lu, Thi-Trang Ho, Tzong-Yi Lee
-sulfenylation sites with substrate motifs. Bioinform. 32 (2) (2016)
Chien-Hsun Huang, Min-Gang Su, Hui-Ju Kao, Jhih-Hua Jhong, Shun-Long Weng, Tzong-Yi Lee
UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines. BMC Syst. Biol. 10 (S-1) (2016)
Chi-Nga Chow, Han-Qin Zheng, Nai-Yun Wu, Chia-Hung Chien, Hsien-Da Huang, Tzong-Yi Lee, Yi-Fan Chiang-Hsieh, Ping-Fu Hou, Tien-Yi Yang, Wen-Chi Chang
PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants. Nucleic Acids Res. 44 (Database-Issue) (2016)
Shih-Wei Lee, Lawrence Shih-Hsin Wu, Guan-Mau Huang, Kai-Yao Huang, Tzong-Yi Lee, Julia Tzu-Ya Weng
Gene expression profiling identifies candidate biomarkers for active and latent tuberculosis. BMC Bioinform. 17 (S-1) (2016)
Van-Nui Nguyen, Kai-Yao Huang, Julia Tzu-Ya Weng, K. Robert Lai, Tzong-Yi Lee
UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation. Database J. Biol. Databases Curation 2016 (2016)
Guan-Mau Huang, Kai-Yao Huang, Tzong-Yi Lee, Julia Weng
An interpretable rule-based diagnostic classification of diabetic nephropathy among type 2 diabetes patients. BMC Bioinform. 16 (S-1) (2015)
Van-Nui Nguyen, Kai-Yao Huang, Chien-Hsun Huang, Tzu-Hao Chang, Neil Arvin Bretaña, K. Robert Lai, Julia Weng, Tzong-Yi Lee
Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities. BMC Bioinform. 16 (S-1) (2015)
Kai-Yao Huang, Tzong-Yi Lee, Yu-Chuan Teng, Tzu-Hao Chang
ViralmiR: a support-vector-machine-based method for predicting viral microRNA precursors. BMC Bioinform. 16 (S-1) (2015)
Hui-Ju Kao, Chien-Hsun Huang, Neil Arvin Bretaña, Cheng-Tsung Lu, Kai-Yao Huang, Shun-Long Weng, Tzong-Yi Lee
A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs. BMC Bioinform. 16 (S18) (2015)
Yi-Ju Chen, Cheng-Tsung Lu, Min-Gang Su, Kai-Yao Huang, Wei-Chieh Ching, Hsiao-Hsiang Yang, Yen-Chen Liao, Yu-Ju Chen, Tzong-Yi Lee
-nitrosylation. Nucleic Acids Res. 43 (Database-Issue) (2015)
Kai-Yao Huang, Hsin-Yi Wu, Yi-Ju Chen, Cheng-Tsung Lu, Min-Gang Su, Yun-Chung Hsieh, Chih-Ming Tsai, Kuo-I Lin, Hsien-Da Huang, Tzong-Yi Lee, Yu-Ju Chen
RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals. Database J. Biol. Databases Curation 2014 (2014)
Hsin-Yi Wu, Cheng-Tsung Lu, Hui-Ju Kao, Yi-Ju Chen, Yu-Ju Chen, Tzong-Yi Lee
Characterization and identification of protein O-GlcNAcylation sites with substrate specificity. BMC Bioinform. 15 (S-16) (2014)
Tzong-Yi Lee, Cheng-Wei Chang, Cheng-Tsung Lu, Tzu-Hsiu Cheng, Tzu-Hao Chang
Identification and characterization of lysine-methylated sites on histones and non-histone proteins. Comput. Biol. Chem. 50 (2014)
Min-Gang Su, Kai-Yao Huang, Cheng-Tsung Lu, Hui-Ju Kao, Ya-Han Chang, Tzong-Yi Lee
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins. Nucleic Acids Res. 42 (Database-Issue) (2014)
Justin Bo-Kai Hsu, Kai-Yao Huang, Julia Tzu-Ya Weng, Chien-Hsun Huang, Tzong-Yi Lee
Incorporating significant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles. J. Comput. Aided Mol. Des. 28 (1) (2014)
Yi-Ju Chen, Cheng-Tsung Lu, Tzong-Yi Lee, Yu-Ju Chen
-glutathionylation. Bioinform. 30 (16) (2014)
Tzu-Hao Chang, Li-Ching Wu, Tzong-Yi Lee, Shu-Pin Chen, Hsien-Da Huang, Jorng-Tzong Horng
EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC. J. Comput. Aided Mol. Des. 27 (1) (2013)
Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee, Neil Arvin Bretaña, Wen-Chi Chang, Yi-Ju Chen, Yu-Ju Chen, Hsien-Da Huang
dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. Nucleic Acids Res. 41 (Database-Issue) (2013)
Kai-Yao Huang, Cheng-Tsung Lu, Neil Arvin Bretaña, Tzong-Yi Lee, Tzu-Hao Chang
ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins. BMC Bioinform. 14 (S-16) (2013)
Min-Gang Su, Tzong-Yi Lee
Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures. BMC Bioinform. 14 (S-16) (2013)
Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Tzu-Hao Chang, Dray-Ming Shien
GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group. BMC Genom. 13 (S-1) (2012)
Tzong-Yi Lee, Yi-Ju Chen, Cheng-Tsung Lu, Wei-Chieh Ching, Yu-Chuan Teng, Hsien-Da Huang, Yu-Ju Chen
-nitrosylation. Bioinform. 28 (17) (2012)
Tzong-Yi Lee, Justin Bo-Kai Hsu, Wen-Chi Chang, Hsien-Da Huang
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. Nucleic Acids Res. 39 (Database-Issue) (2011)
Tzong-Yi Lee, Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Min-Gang Su, Kai-Yao Huang
Investigation and identification of protein γ-glutamyl carboxylation sites. BMC Bioinform. 12 (S-13) (2011)
Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Tzong-Yi Lee
Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites. J. Comput. Aided Mol. Des. 25 (10) (2011)
Tzong-Yi Lee, Zong-Qing Lin, Sheng-Jen Hsieh, Neil Arvin Bretaña, Cheng-Tsung Lu
Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences. Bioinform. 27 (13) (2011)
Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu
PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity. BMC Bioinform. 12 (2011)
Justin Bo-Kai Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang
miRTar: an integrated system for identifying miRNA-target interactions in Human. BMC Bioinform. 12 (2011)
Shu-An Chen, Yu-Yen Ou, Tzong-Yi Lee, M. Michael Gromiha
Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties. Bioinform. 27 (15) (2011)
Shu-An Chen, Tzong-Yi Lee, Yu-Yen Ou
Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins. BMC Bioinform. 11 (2010)
Tzong-Yi Lee, Justin Bo-Kai Hsu, Feng-Mao Lin, Wen-Chi Chang, Po-Chiang Hsu, Hsien-Da Huang
N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites. J. Comput. Chem. 31 (15) (2010)
Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang
Incorporating structural characteristics for identification of protein methylation sites. J. Comput. Chem. 30 (9) (2009)
Wen-Chi Chang, Tzong-Yi Lee, Dray-Ming Shien, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang, Rong-Long Pan
Incorporating support vector machine for identifying protein tyrosine sulfation sites. J. Comput. Chem. 30 (15) (2009)
Yung-Hao Wong, Tzong-Yi Lee, Han-Kuen Liang, Chia-Mao Huang, Ting-Yuan Wang, Yi-Huan Yang, Chia-Huei Chu, Hsien-Da Huang, Ming-Tat Ko, Jenn-Kang Hwang
KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang
An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. J. Comput. Chem. 27 (9) (2006)
Jui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee
ProKware: integrated software for presenting protein structural properties in protein tertiary structures. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang
dbPTM: an information repository of protein post-translational modification. Nucleic Acids Res. 34 (Database-Issue) (2006)
Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang
Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. J. Comput. Chem. 26 (10) (2005)
Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng
KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)