Hui-Ju Kao

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 10

Top Topics

Protein Structure

Machine Learning

Amino Acid Composition

Tandem Mass Spectrometry

Top Venues

Nucleic Acids Res.

BMC Syst. Biol.

Briefings Bioinform.

Publications

Kai-Yao Huang, Hui-Ju Kao, Tzu-Hsiang Weng, Chia-Hung Chen, Shun-Long Weng
iDVIP: identification and characterization of viral integrase inhibitory peptides. Briefings Bioinform. 23 (6) (2022)
Hui-Ju Kao, Van-Nui Nguyen, Kai-Yao Huang, Wen-Chi Chang, Tzong-Yi Lee
-spaced Amino Acid Pairs to Identify Protein Succinylation Sites. Genom. Proteom. Bioinform. 18 (2) (2020)
Kai-Yao Huang, Fang-Yu Hung, Hui-Ju Kao, Hui-Hsuan Lau, Shun-Long Weng
iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features. BMC Bioinform. (1) (2020)
Kai-Yao Huang, Hui-Ju Kao, Justin Bo-Kai Hsu, Shun-Long Weng, Tzong-Yi Lee
Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites. BMC Bioinform. (13) (2019)
Kai-Yao Huang, Tzong-Yi Lee, Hui-Ju Kao, Chen-Tse Ma, Chao-Chun Lee, Tsai-Hsuan Lin, Wen-Chi Chang, Hsien-Da Huang
dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications. Nucleic Acids Res. 47 (Database-Issue) (2019)
Hui-Ju Kao, Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Justin Bo-Kai Hsu, Chien-Hsun Huang, Tzong-Yi Lee
MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs. BMC Syst. Biol. 11 (S-7) (2017)
Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Chien-Hsun Huang, Hui-Ju Kao, Tzu-Hao Chang, Hsin-Yao Wang, Jang-Jih Lu, Tzong-Yi Lee
Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features. BMC Bioinform. 18 (S-3) (2017)
Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee
dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins. Nucleic Acids Res. 44 (Database-Issue) (2016)
Chien-Hsun Huang, Min-Gang Su, Hui-Ju Kao, Jhih-Hua Jhong, Shun-Long Weng, Tzong-Yi Lee
UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines. BMC Syst. Biol. 10 (S-1) (2016)
Hui-Ju Kao, Chien-Hsun Huang, Neil Arvin Bretaña, Cheng-Tsung Lu, Kai-Yao Huang, Shun-Long Weng, Tzong-Yi Lee
A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs. BMC Bioinform. 16 (S18) (2015)
Hsin-Yi Wu, Cheng-Tsung Lu, Hui-Ju Kao, Yi-Ju Chen, Yu-Ju Chen, Tzong-Yi Lee
Characterization and identification of protein O-GlcNAcylation sites with substrate specificity. BMC Bioinform. 15 (S-16) (2014)
Min-Gang Su, Kai-Yao Huang, Cheng-Tsung Lu, Hui-Ju Kao, Ya-Han Chang, Tzong-Yi Lee
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins. Nucleic Acids Res. 42 (Database-Issue) (2014)