Aaron Golden

Publication Activity (10 Years)

Years Active: 2003-2020
Publications (10 Years): 2

Top Topics

Biochemical Networks

High Throughput

Motif Discovery

Top Venues

Publications

Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden
AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX. Bioinform. 36 (9) (2020)
David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden
Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies. ICSC (2016)
Pilib Ó Broin, Terry J. Smith, Aaron Golden
Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach. BMC Bioinform. 16 (2015)
David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden
systems biology research. Database J. Biol. Databases Curation 2015 (2015)
Kevin R. Shieh, Pilib Ó Broin, David Rhee, Matthew Levy, Aaron Golden
Using SAGA and the Open Science Grid to Search for Aptamers. XSEDE (2014)
David Rhee, Joseph Hargitai, R. Brent Calder, Pilib Ó Broin, Kevin R. Shieh, Aaron Golden
'Spring through the gateway': deploying genomic workflows with XSEDE. XSEDE (2013)
Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe
Gene-set analysis is severely biased when applied to genome-wide methylation data. Bioinform. 29 (15) (2013)
Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally
The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE. HealthGrid (2012)
James Mc Donald, Aaron Golden, S. Gerard Jennings
Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation. Int. J. High Perform. Comput. Appl. 23 (1) (2009)
Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden
BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server. Bioinform. 25 (11) (2009)
Ronan M. T. Fleming, Aaron Golden, Heinz-Peter Nasheuer
Thermodynamically constrained steady state solution space of the E. coli metabolic network. BMC Syst. Biol. 1 (S-1) (2007)
Nigel McCoy, Shaun Mahony, Aaron Golden
Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques. GCCB (2006)
Shaun Mahony, Panayiotis V. Benos, Terry J. Smith, Aaron Golden
Self-organizing neural networks to support the discovery of DNA-binding motifs. Neural Networks 19 (6-7) (2006)
Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. ISMB (Supplement of Bioinformatics) (2005)
Shaun Mahony, David Hendrix, Aaron Golden, Terry J. Smith, Daniel S. Rokhsar
Transcription factor binding site identification using the self-organizing map. Bioinform. 21 (9) (2005)
Shaun Mahony, David Hendrix, Terry J. Smith, Aaron Golden
Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences. Artif. Intell. Rev. 24 (3-4) (2005)
Shaun Mahony, James O. McInerney, Terry J. Smith, Aaron Golden
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinform. 5 (2004)
Shaun Mahony, Terry J. Smith, James O. McInerney, Aaron Golden
A New Approach to Gene Prediction Using the Self-Organizing Map. CSB (2003)