John M. Greally

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 5

Top Topics

Functional Modules

Gene Expression

Top Venues

Publications

Samuel Rosean, Eric A. Sosa, Donal F. O'Shea, Srilakshmi M. Raj, Cathal Seoighe, John M. Greally
Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization. BMC Bioinform. 25 (1) (2024)
Laurence de Torrenté, Samuel E. Zimmerman, Masako Suzuki, Maximilian Christopeit, John M. Greally, Jessica C. Mar
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data. BMC Bioinform. (21) (2020)
Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden
AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX. Bioinform. 36 (9) (2020)
Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica C. Mar
Aneuvis: web-based exploration of numerical chromosomal variation in single cells. BMC Bioinform. 20 (1) (2019)
N. Ari Wijetunga, Andrew D. Johnston, Ryo Maekawa, Fabien Delahaye, Netha Ulahannan, Kami Kim, John M. Greally
SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information. BMC Bioinform. 18 (1) (2017)
Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally
The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE. HealthGrid (2012)
Reid F. Thompson, Masako Suzuki, Kevin W. Lau, John M. Greally
A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. Bioinform. 25 (17) (2009)
Reid F. Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally
An analytical pipeline for genomic representations used for cytosine methylation studies. Bioinform. 24 (9) (2008)