AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX.
Kevin R. ShiehChristina KratschmerKeith E. MaierJohn M. GreallyMatthew LevyAaron GoldenPublished in: Bioinform. (2020)
Keyphrases
- motif discovery
- motif finding
- dna sequences
- binding sites
- data mining tasks
- pattern discovery
- biological sequences
- multiobjective optimization
- genomic sequences
- computational biology
- rna sequences
- data mining algorithms
- genome wide
- transcription factors
- genetic algorithm
- human genome
- data structure
- biological networks
- similarity search
- natural language processing
- evolutionary algorithm
- data analysis
- similarity measure