Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.
Pilib Ó BroinTerry J. SmithAaron GoldenPublished in: BMC Bioinform. (2015)
Keyphrases
- dna binding
- transcription factors
- binding sites
- transcription factor binding sites
- chip seq
- dna sequences
- genome wide
- human genome
- gene expression
- cis regulatory
- microarray
- motif discovery
- clustering algorithm
- transcriptional regulation
- clustering method
- component analysis
- computational biology
- co occurrence
- k means
- systems biology
- data mining tasks
- regulatory networks
- document clustering
- gene regulation
- protein families
- cluster analysis
- biological processes
- biological sequences
- data points
- sequence data
- regulatory elements