Dennis R. Livesay

Publication Activity (10 Years)

Years Active: 2005-2015
Publications (10 Years): 2

Top Topics

Base Classifiers

Pruning Algorithm

Emerging Patterns

Top Venues

PLoS Comput. Biol.

Algorithms Mol. Biol.

Publications

Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments. PLoS Comput. Biol. 11 (7) (2015)
Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs
A virtual pebble game to ensemble average graph rigidity. Algorithms Mol. Biol. 10 (2015)
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity. PLoS Comput. Biol. 9 (7) (2013)
Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen
A visual analytics approach to exploring protein flexibility subspaces. PacificVis (2013)
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged. PLoS Comput. Biol. 8 (3) (2012)
Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics. Comput. Graph. Forum 30 (3) (2011)
Luis C. González, Dennis R. Livesay, Donald J. Jacobs
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game. BCB (2011)
K. C. Dukka Bahadur, Dennis R. Livesay
Topology Improves Phylogenetic Motif Functional Site Predictions. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (1) (2011)
Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
K. C. Dukka Bahadur, Dennis R. Livesay
Improving position-specific predictions of protein functional sites using phylogenetic motifs. Bioinform. 24 (20) (2008)
Usman Roshan, Satish Chikkagoudar, Dennis R. Livesay
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. BMC Bioinform. 9 (2008)
Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs
Conformational Entropy of an Ideal Cross-Linking Polymer Chain. Entropy 10 (3) (2008)
Eric Chea, Dennis R. Livesay
How accurate and statistically robust are catalytic site predictions based on closeness centrality? BMC Bioinform. 8 (2007)
Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskandari, Usman Roshan
symporter family. BMC Bioinform. 8 (2007)
Swati Pande, Amar Raheja, Dennis R. Livesay
Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks. CIBCB (2007)
Satish Chikkagoudar, Usman Roshan, Dennis R. Livesay
eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Usman Roshan, Dennis R. Livesay
Probalign: multiple sequence alignment using partition function posterior probabilities. Bioinform. 22 (22) (2006)
Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. BIBE (2006)
Usman Roshan, Dennis R. Livesay, David La
Improved Phylogenetic Motif Detection Using Parsimony. BIBE (2005)
David La, Dennis R. Livesay
MINER: software for phylogenetic motif identification. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
David La, Dennis R. Livesay
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets. BMC Bioinform. 6 (2005)