Probalign: multiple sequence alignment using partition function posterior probabilities.
Usman RoshanDennis R. LivesayPublished in: Bioinform. (2006)
Keyphrases
- posterior probability
- multiple sequence alignment
- probability density function
- bayesian networks
- bayesian framework
- approximate inference
- generative model
- genetic algorithm
- probability distribution
- protein sequences
- probabilistic model
- secondary structure
- conditional probabilities
- markov chain monte carlo
- graphical models
- markov networks
- belief propagation
- markov random field
- information retrieval
- density function
- upper and lower bounds
- prior knowledge
- similarity measure
- structure learning
- parameter estimation
- dynamic programming