PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.
Satish ChikkagoudarDennis R. LivesayUsman RoshanPublished in: Nucleic Acids Res. (2010)
Keyphrases
- rna sequences
- search tools
- partition function
- free energy
- belief propagation
- approximate inference
- upper bound
- markov random field
- secondary structure
- dna sequences
- closed form
- end users
- personal information
- graphical models
- parameter estimation
- protein sequences
- probability density function
- energy function
- metadata
- rna secondary structures
- graph cuts
- lower bound
- gaussian process
- fixed point
- message passing
- bayesian framework
- latent variables
- machine learning
- structure learning
- sequence databases
- hidden markov models
- pairwise
- hyperparameters
- stereo matching
- model selection
- least squares
- learning algorithm