Deeptak Verma

Publication Activity (10 Years)

Years Active: 2008-2021
Publications (10 Years): 4

Top Topics

Machine Learning Models

Protein Sequences

Visual Analytics

Top Venues

PLoS Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Chem. Inf. Model.

Publications

Spencer J. Mitchell, Deeptak Verma, Karl E. Griswold, Chris Bailey-Kellogg
Building blocks and blueprints for bacterial autolysins. PLoS Comput. Biol. 17 (4) (2021)
Yuting Xu, Deeptak Verma, Robert P. Sheridan, Andy Liaw, Junshui Ma, Nicholas M. Marshall, John McIntosh, Edward C. Sherer, Vladimir Svetnik, Jennifer M. Johnston
Deep Dive into Machine Learning Models for Protein Engineering. J. Chem. Inf. Model. 60 (6) (2020)
Deeptak Verma, Gevorg Grigoryan, Chris Bailey-Kellogg
Pareto Optimization of Combinatorial Mutagenesis Libraries. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Deeptak Verma, Gevorg Grigoryan, Chris Bailey-Kellogg
OCoM-SOCoM: Combinatorial Mutagenesis Library Design Optimally Combining Sequence and Structure Information. BCB (2016)
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity. PLoS Comput. Biol. 9 (7) (2013)
Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen
A visual analytics approach to exploring protein flexibility subspaces. PacificVis (2013)
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged. PLoS Comput. Biol. 8 (3) (2012)
Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics. Comput. Graph. Forum 30 (3) (2011)
Dipankar Sengupta, Deeptak Verma, Pradeep Kumar Naik
Docking-MM-GB/SA and ADME Screening of HIV-1 NNRTI Inhibitor: Nevirapine and its Analogues. Silico Biol. 8 (3-4) (2008)