Donald J. Jacobs

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 14

Top Topics

Hypothesis Formation

Density Estimation

Statistical Measures

Top Venues

PLoS Comput. Biol.

Publications

Zach D. Merino, Jenny Farmer, Donald J. Jacobs
Probability Density Estimation through Nonparametric Adaptive Partitioning and Stitching. Algorithms 16 (7) (2023)
Chris S. Avery, Lonnie Baker, Donald J. Jacobs
Functional Dynamics of Substrate Recognition in TEM Beta-Lactamase. Entropy 24 (5) (2022)
Jenny Farmer, Donald J. Jacobs
MATLAB tool for probability density assessment and nonparametric estimation. SoftwareX 18 (2022)
Jenny Farmer, Donald J. Jacobs
PDFEstimator: An R Package for Density Estimation and Analysis. R J. 14 (2) (2022)
John Patterson, Chris S. Avery, Tyler Grear, Donald J. Jacobs
Biased Hypothesis Formation From Projection Pursuit. CoRR (2022)
Charles C. David, Chris S. Avery, Donald J. Jacobs
JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit. BMC Bioinform. 22 (1) (2021)
Donald J. Jacobs
Victory Tax: A Holistic Income Tax System. Entropy 23 (11) (2021)
John Patterson, Chris S. Avery, Tyler Grear, Donald J. Jacobs
Biased Hypothesis Formation From Projection Pursuit. Adv. Artif. Intell. Mach. Learn. 1 (3) (2021)
Tyler Grear, Donald J. Jacobs
Classifying EEG motor imagery signals using supervised projection pursuit for artefact removal. SMC (2021)
Jenny Farmer, Zach Merino, Alexander Gray, Donald J. Jacobs
Universal Sample Size Invariant Measures for Uncertainty Quantification in Density Estimation. Entropy 21 (11) (2019)
Charles C. David, Ettayapuram Ramaprasad Azhagiya Singam, Donald J. Jacobs
JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories. BMC Bioinform. 18 (1) (2017)
Jenny Farmer, Fareeha Kanwal, Nikita Nikulsin, Matthew C. B. Tsilimigras, Donald J. Jacobs
Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories. Entropy 19 (12) (2017)
Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments. PLoS Comput. Biol. 11 (7) (2015)
Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs
A virtual pebble game to ensemble average graph rigidity. Algorithms Mol. Biol. 10 (2015)
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity. PLoS Comput. Biol. 9 (7) (2013)
Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen
A visual analytics approach to exploring protein flexibility subspaces. PacificVis (2013)
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged. PLoS Comput. Biol. 8 (3) (2012)
Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics. Comput. Graph. Forum 30 (3) (2011)
Luis C. González, Dennis R. Livesay, Donald J. Jacobs
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game. BCB (2011)
Simina Vasilache, Nazanin Mirshahi, Soo-Yeon Ji, James Mottonen, Donald J. Jacobs, Kayvan Najarian
A Signal Processing Method to Explore Similarity in Protein Flexibility. Adv. Bioinformatics 2010 (2010)
Donald J. Jacobs
Best Probability Density Function for Random Sampled Data. Entropy 11 (4) (2009)
Scott Barlowe, Tianyi Zhang, Yujie Liu, Jing Yang, Donald J. Jacobs
Multivariate visual explanation for high dimensional datasets. IEEE VAST (2008)
Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs
Conformational Entropy of an Ideal Cross-Linking Polymer Chain. Entropy 10 (3) (2008)